KEGG   Solanum tuberosum (potato): 102606056
Entry
102606056         CDS       T02981                                 
Name
(RefSeq) probable U6 snRNA-associated Sm-like protein LSm4
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
sot  Solanum tuberosum (potato)
Pathway
sot03018  RNA degradation
sot03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:sot00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    102606056
  09123 Folding, sorting and degradation
   03018 RNA degradation
    102606056
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sot03019]
    102606056
   03041 Spliceosome [BR:sot03041]
    102606056
Messenger RNA biogenesis [BR:sot03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     102606056
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     102606056
Spliceosome [BR:sot03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    102606056
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 102606056
NCBI-ProteinID: XP_015163014
Position
Un
AA seq 112 aa
MNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRGDRKPPGVG
GRGRGRGGRDEGAAGRQAKGIGRGMEDAGAKGRGKGGPGAKSGGKGGGRGRG
NT seq 339 nt   +upstreamnt  +downstreamnt
atgaatatccatcttcgtgaagttatctgtacgtcaaaggatggagataggttttggaga
atgcctgaatgttatattcgtggcaataccattaagtatcttagagttcctgacgaggtg
attgataaagttcaagaagaaacaaaaagccgtggagatagaaaaccacctggtgtcggt
ggacgaggaaggggaagaggaggtagggatgaaggtgctgctggaagacaggcgaaaggc
attgggcgtggaatggaagatgcaggtgccaaaggccggggcaaaggaggacctggtgcc
aagtctggtggaaaaggtggtggccgtggacgtggctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (13)   

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