KEGG   Sphingomonas panacis: AWL63_09360
Entry
AWL63_09360       CDS       T04760                                 
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
span  Sphingomonas panacis
Pathway
span03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:span00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AWL63_09360
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:span03019]
    AWL63_09360
   03016 Transfer RNA biogenesis [BR:span03016]
    AWL63_09360
Enzymes [BR:span01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     AWL63_09360
Messenger RNA biogenesis [BR:span03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     AWL63_09360
Transfer RNA biogenesis [BR:span03016]
 Prokaryotic type
  tRNA degradation factors
   AWL63_09360
SSDB
Motif
Pfam: RNB CSD2 S1 LexA_DNA_bind
Other DBs
NCBI-ProteinID: AOH84143
UniProt: A0A1B3Z9N7
Position
complement(2090462..2092693)
AA seq 743 aa
MPKRTPPGLPTREQVLDFISTSPTPAGKREIARAFGLSAQDKIALKALLKDMADEGLIDS
APGRAFHKLGGLPKVTVLRIADVDDGGNVWAVPERWEAETPAPRLRVRERKHGALAVGDR
VLARTEEAGNGWIAHPMKSLARGEELILGVLHEEGGKLWLQGVEKKDRRDFQVSDAGGAQ
PGDLVLAEKAGRPPRITARVTEILGDPFAPRSFSMIAIHKLGIPTAFAPEAIDEAHRVAG
LHMGEDREDLRHLPIVAIDPADARDHDDAVWAAPDDDPANPGGWQAIVAIADVSFYVRPG
GALDKDARRRGNSVYFPDRVVPMLPEELSADICSLKEGVDRAALVCHLRIAENGTLKTWR
FTRGVIRVVANIAYEDAQAVMDRATSSLPQSREADLLPILTPLWGCWKALSKARAARAPL
DLDLPERRVMLDEKGRILSVAPRERLDAHMLIEDYMIAANVAAAKALEAKKAPVMYRVHE
PPSREKLVALKEYLKTFGVEFALGQVVRPGTFNHILVKVGEADFRPQIMEQVLRTQTQAY
YAPENHGHFGLALGSYAHFTSPIRRYADLLVHRSLVDAYKLGAGGLTEGEAAAMEKIGQS
ISMLERRAMEAERDTIDRYVAAFLATRIGEIVDVRITGVASFGFFATVEGIGGDGLMPVR
DLGREYFRYDDAGKRLVGEDSGTVYASGMRLQLRLAESNPVSGALRFEMVEGGARPAREE
RAGPRVIKRRGRPANIRHQGKRR
NT seq 2232 nt   +upstreamnt  +downstreamnt
atgcccaagcgtaccccgcccggcctgcccacgcgcgagcaggtcctcgacttcatctcc
acctcccccacgcctgcgggcaagcgcgagatcgcgcgcgccttcgggctgagcgcgcag
gacaagatcgcgctcaaggcgctgctcaaggacatggccgacgaagggctgatcgacagc
gcccccggccgcgccttccacaagctcggcggtctgcccaaggtgacggtgctgcgcatc
gccgatgtcgatgacggcggcaacgtctgggcggtgcctgaacgctgggaggcggaaacg
cctgcgccgcgcctccgcgtgcgcgaacgcaagcatggcgcgctcgccgtgggggatcgg
gtgctggcgcgcaccgaagaagccggcaacggctggatcgcgcatccgatgaagagtctc
gcgcgcggcgaggaactgattctcggcgtgctccacgaggagggcggcaagctctggctg
caaggcgtcgagaagaaggatcgccgcgatttccaggtctccgacgcgggcggcgcccag
cccggcgatctcgtgctggccgagaaggcggggcgcccgccgcgcatcaccgcgcgcgtg
accgagatcctcggcgaccccttcgcgccgcgcagcttctcgatgatcgcgatccacaaa
ctcggtattccaacagccttcgcccccgaagccatcgacgaagcccaccgcgtcgccggg
cttcatatgggcgaggatcgtgaagatctgcgccacctgccgatcgtcgcgatcgacccc
gccgacgcgcgcgaccatgacgatgcggtctgggccgcccccgacgacgaccccgccaac
cctggcggctggcaggcgatcgtcgcgatcgccgacgtgagcttctacgtccgccccggc
ggcgcgctcgacaaggacgcgcggcggcgcggcaacagtgtctatttccccgaccgcgtc
gtaccgatgctgcccgaagaactgtcggcggacatctgttcgctgaaagagggcgtcgat
cgcgcagcgctggtctgtcatctgcgcatcgccgaaaacggcacgctgaagacctggcgc
ttcacgcgcggcgtgatccgggtggtggcgaatatcgcctatgaggacgcgcaggcggtg
atggatcgcgcgacctcctcccttccccaatcgcgggaggcggatttgctgcctatcctc
acgcccctctggggctgctggaaggcgctctccaaggcccgtgccgcacgcgcgccgctc
gatctcgatcttcccgaacggcgggtgatgctcgacgaaaagggtcgaatcctctcggtc
gcgccgcgcgagcgtctcgacgcgcacatgctgatcgaggattacatgattgccgccaac
gtcgccgccgccaaggcgctggaggcgaagaaggcgccggtgatgtaccgcgtccacgag
ccgcccagccgcgagaagctcgtcgcgctcaaggagtatctcaagaccttcggcgtcgag
ttcgcgctcggtcaggtggtgcggccgggcacgttcaatcatatcctcgtcaaagtcggc
gaggcggatttccgcccgcagatcatggagcaggtgctgcgcacgcagacccaggcctat
tacgcgcccgaaaaccacggccatttcggcctcgcgctcggcagttacgcgcatttcact
tcgccgatccggcgctatgccgatcttctcgtccaccgttcgctggtcgatgcgtataag
ctgggcgcaggcgggctgaccgagggcgaagcggcggcgatggagaagatcggccagtcg
atctcgatgctggagcgccgtgcgatggaagccgagcgcgacacgatcgaccgctatgtc
gccgccttcctcgccacccgcatcggcgagatcgtagatgtgcggatcaccggcgtcgcc
agcttcggcttcttcgcgacggtcgaggggatcggcggcgacgggctgatgccggtgcgc
gatctggggcgcgaatattttcgctacgacgatgccggcaagcggctggtcggcgaggat
agcggcaccgtctacgccagcggcatgcggctgcaattgcggctggcggaatcgaacccg
gtatcgggcgcgctgcgcttcgagatggtcgagggcggcgcacgccccgcacgcgaagag
cgcgccggcccgcgcgtcatcaagcggcgcgggcgaccggccaacatccggcatcaaggc
aaacgccgctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (15)   

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