KEGG T06034: DRN02

Sphingomonas paucimobilis: DRN02_017675

Entry

DRN02_017675      CDS       T06034

Name

(GenBank) DEAD/DEAH box helicase

K05592

ATP-dependent RNA helicase DeaD [EC:5.6.2.7]

Organism

spau Sphingomonas paucimobilis

Pathway

spau03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:spau00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    DRN02_017675
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:spau03019]
    DRN02_017675
   03009 Ribosome biogenesis [BR:spau03009]
    DRN02_017675
Enzymes [BR:spau01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     DRN02_017675
Messenger RNA biogenesis [BR:spau03019]
Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     DRN02_017675
Ribosome biogenesis [BR:spau03009]
Prokaryotic type
  rRNA helicases
   DRN02_017675

SSDB

Motif

Pfam:

DEAD Helicase_C DbpA ResIII CMS1 AAA_22

Other DBs

NCBI-ProteinID:

QBE93623

Position

3772508..3774250

AA seq 580 aa
MPFSALPPVLSAALSARGYAAPTPVQAAVIEDDAQGRDLIVSAQTGSGKTVAFGLAMASE
LLQGADHLPPAGAPMALVIAPTRELALQVSRELEWLYAGARARIATCVGGMDASRERRAL
NHGAHIVVGTPGRLRDHLERGALDLSSLKFVVLDEADEMLDMGFREDLEQILDATPTERR
TLLFSATMPRPIVQLAKRYQTNAKRIETISEDKGHADIAYQVVTVAPADIEAAVVNLLRL
HEAEVAILFCATRDNVRHLHASLVERGFSAVALSGEHSQNERNHALQALRDGRARVCVAT
DVAARGIDLPGLTLVIHVEIPRDAEALQHRSGRTGRAGRKGTAILIVPYPRRRRVEGMLR
GARIDAEWRRAPTLEEIREQDRERLLTALLAPVEVDEADRELATRLLAEKSAEDIAAALV
RAHRAALPQAEELVEGDAPPPRERREGFDDTVWFRMSVGRRQNADPRWLLPLICRRGHIT
RNEIGAIRIQPNETLFEVPTALASRFVAALKRTEADHAEDDIAIEQADGPPAGGASNGGP
RRGGPGGGRPMGGRPAGGPGGPRRYSPRPTQGGPRGPRRG

NT seq 1743 nt +upstreamnt +downstreamnt
atgcctttttctgctttgccgccggtcctgtcggcagccctttccgcgcgtggctatgcc
gcgccgacccccgtccaggccgccgtcatcgaggatgatgcgcagggccgcgacctgatc
gtctccgcccagaccggttcgggtaagaccgtcgccttcggcctcgctatggcgagcgag
ctgcttcagggcgcggatcatctgcccccggccggcgcgccgatggcgctggtcatcgcc
ccgacccgcgaactggcgctgcaggtcagccgtgagctcgaatggctctatgccggcgcc
cgcgcgcgcatcgccacctgtgtcggcggcatggacgcctcgcgtgagcgtcgcgcgctc
aaccacggcgcgcatatcgtcgtcggcacgccgggtcgtctgcgcgatcacctcgagcgc
ggtgcgctcgacctgtcgtcgctgaagttcgtcgtgctcgacgaggcggacgagatgctc
gacatgggtttccgcgaggatctggaacagattctcgatgcgacgccgaccgagcgccgc
acgctcctgttctcggcgaccatgccgcgcccgatcgtgcagctcgccaagcgctaccag
accaatgccaagcggatcgagacgatcagcgaggataagggccatgccgacatcgcctat
caggtggtgacggtcgcccccgccgatatcgaggcggcggtggtcaacctgctgcgcctg
cacgaggccgaggttgcgatcctgttctgcgcgacccgcgacaatgtccgccacctgcac
gccagtctggtcgagcgcggcttctcggccgtggcgctgtcgggtgagcattcgcagaat
gagcgtaaccatgcgctgcaagcgctgcgtgacggccgcgcccgtgtctgcgtcgcgacc
gacgtcgcggcgcgcgggatcgacttgccgggactgacgctcgtcatccatgtcgaaatc
ccgcgcgatgccgaagcgctccagcaccgctcgggccgcaccggtcgcgcgggccgcaag
ggtaccgcgatcctgatcgtcccctatccgcgccgtcgccgcgtcgaggggatgctgcgc
ggtgcgcgaatcgatgccgaatggcgtcgtgcgccgacgctggaggaaattcgcgaacag
gatcgcgagcggttgctgaccgcattgctcgcccccgtcgaggtggacgaggccgatcgc
gaactggcgacgcgcctgctcgccgagaagtcggccgaggacatcgccgccgctttggtc
cgcgcgcaccgcgccgcgctgccccaggccgaggaactggtcgagggcgatgcaccgccg
ccgcgggagcgtcgcgagggcttcgacgacaccgtctggttccggatgagcgtcggccgc
cgccagaatgccgatccgcgctggctgctgccgctgatctgccgtcgcgggcacatcacc
cgcaacgagatcggcgcgatccgcatccagccgaacgagacgctgttcgaggtgccgacc
gcgctggcgtcgcgcttcgtcgccgcgctgaagcggaccgaggcggatcatgccgaggac
gatatcgcgatcgagcaggccgatggcccccccgccggtggcgcatcgaatggcggcccg
cgtcgcggtgggccgggcggtggtcgtccgatgggcggtcgtccggccggcggtcccggc
ggcccgcgccgctattcgccgcgcccgacgcagggcggcccgcgcggtccgcgtcgcggc
taa

All links

Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein domain (6)   
   Pfam (6)   
All databases (14)   

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