KEGG   Solanum pennellii: 107002569
Entry
107002569         CDS       T04130                                 
Name
(RefSeq) CCR4-NOT transcription complex subunit 1
  KO
K12604  CCR4-NOT transcription complex subunit 1
Organism
spen  Solanum pennellii
Pathway
spen03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:spen00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    107002569
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:spen03019]
    107002569
Messenger RNA biogenesis [BR:spen03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     107002569
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     107002569
SSDB
Motif
Pfam: Not1 CNOT1_CAF1_bind CNOT1_TTP_bind DUF3819 CNOT1_HEAT
Other DBs
NCBI-GeneID: 107002569
NCBI-ProteinID: XP_015056121
Position
1:94628628..94653766
AA seq 2411 aa
MIPFGSAASTQIRFLFQSLNGSNSDTVIHELRQYLSYGVEGSILLLRTCIDHLNVYGKDS
KNTQLDPVFASIFRCILDKPNFSTVLSESLKDTAISEEFLVNLSNAFHLAISEKIGVGLA
LSDSENVDVKKCGTNYCMGQIAELRSTNSSLDDAKQIQNVLMFLNQSEGLSKHVDLFMHL
LSLVPSKEAQFILTPLLSDEFHEANFLRNLDFLNDDGEDDFDVLLADMEKEMSIADIMKE
LGYGCTASILQCKEMLSLFLPLTEVTVARILGMVVRTCSGIEDNLNMFSTFRTALGSISA
TDPSPLNSWNADILIDAIKQLAPELNWVTVLDNLDHEGFYIPDGAAFSFLMSIYEHACQD
PFPLETICGSIWKNAEGQLSLLKYAVSVPPEVFTFAHSRRQLDCADAVNNHKIQNGHANH
AWLCLDLLEVLCQLAEIGYASSVRSILEHPLKHCPEVLLHGMAHINTAYNLLQHEVAAAA
FPVMLKNAAARGMMILHLWHVNTSILCWGVVEALDVDLDNMHTVLDACQELKILSSVLDR
IPFAFGIRLAALASRKELLDLEKWLSNNLNTYKDTFYEACLKFLREIHLAALDDASNHFD
PPSALLTIYSVLKSHSSLVSSCHLSEELDKLHIRYMDAKLRLKSVGGADTSISDGGGSDA
IEAEANVYFHQMFSGQLSNDATVQMLARFKESTEKREQAIFECMIANLFEEYKFLSKYPE
RQLRIAAVLFGSLIKNQLVTHLALGIALRAVLDALRKPADSKMFAFGILALEQFVDRLIE
WPQYCNHILQISHLRVANPELVVFIERALARISLAHSESEVGHSPAVDQFHGPIPSSPMN
SEGQTFQVVGQSGLQQSMQGPSSSQLPLRQQSPIEERKPSAALSGYLKPALSPAVQPATV
PSSDNAGIQKPQGPSSTSAVLTSSPGFLRPSRAITSGRFGSALNIETLVAAAERRETPIE
APASEIQDKISFIINNLSATNFEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLY
LKFLDKANSKSLFKEIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKITIGKNHV
LRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMGILELLAEIYA
MPNLKMNLKFDIEVLFKNLGVDLKEVVPSSLLKDRVREVEGNPDFSNKDAGGSSQPQMVA
DAKSGIISSLNQVELPLDVASPHPSGPSRILTQYAAPLHLPSAPMMEDEKLAALGLSDQL
PSAQGLLQGQSPFSVSQLPATASNIEQQVVVNPKLHALGLQLHFQSVLPMAMDRAIKEIV
SSIVQRSVSIATQTTKELVLKDYAMESDETRIRNAAHLMVASLSGSLAHVTCKEPLRGSI
SGQLRNLLQGLTIASDLLEQALQLVTNDNLDLGCAMIEQAATEKAIQTIDGEIAQQLAIR
RKQREGPGASYFDASPYTQGHMGGLPEALRPKPGRLSHSQQRVYEDFVRLPWQNQSSQSS
NAVTAVPSISSSSVGVSRAYMSGTGQLNSNLYSSGLVNAAITAVPQPLEISEETDTSSQL
NSASSPHLGTGDNVTSSSFETEAIVEPFTSVSAPESHPVEPSSLAKESGASLQPSNATAT
SERVGNSISEPLLTTGDALDKYQIISEKLENLVSEEAEEAEIQALIAEVPVIILKCISRD
EAALAVAQKAFKRLYENATNSAHVGAHLAILSSIRDVSKLFVKELTSWVIYSDEERKFNK
DITVGLIRSELLNLAEYNVHMSKLLDAGRNKSATEFAVSLIQTLVISDSRVISELQNLVD
ALAKIAARPGSPESLQQLVEIAKNPGANAAALSSVSFGKEDGNKQSRDKKIAVTATGTRE
DYGVSECIEPDSASFREQVSMLFAEWYRICEIPGANDATHAHYILQLNQSGLLKGDETSE
RFFRRLTELSVSHCLSSEVMSSTPQSHQAQPLSFLAIDIYAKLVFSILKFYPVDQGSSKL
LLLPKVLAVTVRFIQRDADEKKMIFNPRPYFRLFINWLVDLSSLDPVFDGANFQVLTALA
NAFHALQPLKVPGFSFAWLELVSHRSFMPKLLAGNAQKGWPYFQRLLVDLFQFMEPFLRN
AELGEPVQFLYKGTLRVLLVLLHDFPEFLCDYHFSFCDVIPPSCIQMRNIILSAFPRNMR
LPDPSTPNLKIDLLAEISQSPRILSEVDAALKSKQMKGDVDEYLKTRQQGSPFLSELKQK
LLLSPSEAAKAGTRYNVPLINSLVLYVGMQAIQQLQAKTPHAQSMPSSVPFAVFLVGAAL
DVFQTLIMDLDTEGRYLFLNAVANQLRYPNNHTHYFSFILLYLFAESNQEMIQEQITRVL
LERLIVNRPHPWGLLITFIELIKNPRYNFWSRPFTRCAPEIEKLFESVSRSCGGPKPVDE
NVVSGGIPDIH
NT seq 7236 nt   +upstreamnt  +downstreamnt
atgattccttttggctccgctgcttctactcagattcggtttctgttccagagcttgaac
ggttccaattctgacactgtaatccatgagctccgtcagtatctgtcatatggagttgaa
gggagcatattgcttcttcggacctgcatcgatcatctgaatgtttatgggaaagactcg
aagaacacacagctggatcctgtatttgcttccattttcagatgcatcttggacaagcca
aatttcagcactgttctttctgaatccctcaaggacactgcaatcagtgaggagttttta
gtgaatctatcaaatgctttccacttggcaatatctgaaaaaatcggagttggccttgcg
ttgtcagactcagaaaatgttgatgtcaagaaatgtggaaccaattactgcatgggccag
attgcagaattacgttccaccaactcttctttagatgatgccaagcaaattcagaatgtt
cttatgtttctgaatcaatctgaaggcctctctaagcatgtagacttgtttatgcatttg
ctatcacttgtcccgtcaaaagaagcccagttcattttaactccattgctatctgatgaa
tttcatgaagctaattttttgaggaacttagatttcttaaatgacgacggtgaagatgat
tttgatgttcttttggcagatatggagaaagaaatgagcattgcagacatcatgaaggaa
ttgggttatggttgcactgcttctatcttgcaatgcaaagaaatgttatccttatttttg
ccgctgactgaagtgactgttgctaggatacttggtatggttgtacgtacctgttcaggt
atcgaggataaccttaacatgttctcaacgttccgtactgctcttggtagcatctctgcg
actgatccatcaccattgaattcctggaatgctgacatccttattgatgcaattaagcaa
cttgctccagaacttaactgggtaactgttttagataatctagatcatgagggtttttat
attcccgacggagcagccttttcctttttgatgtccatttacgaacatgcctgtcaggat
ccttttcctcttgaaactatttgtggttctatctggaagaatgctgagggtcaactttcc
ttactcaagtatgctgtgtcagtgcctcctgaagtatttaccttcgcacattctaggagg
caactggattgtgctgatgcggtgaacaaccataaaatccaaaatggacatgctaatcat
gcatggttgtgtcttgaccttctcgaagttctttgccagcttgctgagataggttatgca
agctctgtgcggtccatcctggagcaccctctgaagcactgtccagaagtcttgcttcat
gggatggcccacattaatactgcatataatctcctccagcatgaagttgccgctgctgct
tttcctgttatgctaaaaaatgctgctgctaggggtatgatgattcttcatttgtggcat
gttaatactagcatcttgtgttggggtgttgtagaagcattggacgttgatctggacaac
atgcacacagttttggatgcctgtcaagagctgaagattctatcatcagtactagatagg
ataccttttgctttcggcatcagacttgctgcccttgcttcccgcaaggagctgttggat
ttagagaaatggttgagcaataacttgaacacatacaaagataccttctatgaggcatgc
ctaaagttcttgagggaaatacatcttgctgctctagatgatgcctccaaccattttgat
ccccccagtgctcttttgactatttattcagtccttaagtctcattctagcttagtttct
tcctgccacttatctgaggagctggacaagttgcacataagatacatggatgctaaatta
aggcttaaaagtgttggtggtgctgatacatccatttctgatggtggtggttctgatgct
attgaagcagaagcaaacgtatactttcatcaaatgttctctggtcagctgagtaatgat
gcaacagttcaaatgcttgcccgtttcaaagaatcaactgaaaagagggagcaagcaatt
ttcgagtgcatgatcgctaatctgtttgaagaatacaaatttctctccaagtacccagaa
aggcagcttagaattgcagctgttctatttgggtcgcttattaagaatcagctggtaact
catcttgcacttggtattgccttgcgagctgtcttggatgcgttgcgcaagcctgctgat
tcgaagatgtttgcttttgggattttggcacttgaacagttcgttgatcgtctgattgaa
tggccccaatactgcaaccatatcttgcaaatatctcatctccgagtagctaatccagag
cttgttgtgttcattgaacgggcacttgctaggatatcactggcacattctgagtcagag
gtgggtcacagccctgctgttgatcaattccacggtcctatcccatcttccccaatgaat
tccgagggtcaaacatttcaagtggttggacagagtggtttgcagcaaagtatgcaagga
ccctcttcaagccagcttcctctgaggcaacagagccccatagaggagagaaaaccctct
gctgctctctctggctacttgaagccagctttatcacctgcagtgcaacctgccacagtt
ccttcaagtgataatgctggcattcagaagccacaaggtccaagcagtacttcagcagta
ctgacatcttctcctggttttcttcgcccatctagagccattacctcaggaaggtttggt
tctgcactgaatattgaaacacttgttgcagctgcagagagaagagaaacacccatagag
gctcctgcatcagaaatacaggataagatttcatttattatcaataacttatctgcgaca
aattttgaggctaaagcaaaagagttcactgaaattttgaaagagcagtactacccatgg
tttgctcagtatatggtgatgaaaagagcgagcattgagccaaattttcatgacttgtac
ctgaagttcttagataaagccaattcaaaatctctgttcaaggagattgtccaagcaacc
tacgagaactgcaaggttcttttagggtcagagttgataaagtcaagttcggaagagcgt
tctttgctgaaaaaccttggaagctggctaggcaaaatcacaattggaaagaatcatgtc
ttgagggcgcgagagattgatccgaagtctttgattattgaggcatatgaaaaaggtttg
atgattgcagttattcctttcacatcgaagattctggaaccatgccaaagcagtctagca
taccaaccacctaacccatggaccatgggcattcttgaattacttgctgagatttatgca
atgccaaatcttaaaatgaacctcaagtttgacattgaggtcctgttcaaaaatcttggt
gtggatctaaaagaggtagttccaagttctcttcttaaagaccgagtgagagaagtggaa
ggaaatcccgacttctcaaacaaggatgctggtggatcttcccaaccacagatggtggcc
gatgccaaatctggcattatatcttcactaaaccaggttgaactaccacttgatgttgcc
agtcctcatcctagtggcccttcacgaattttaactcagtatgctgctccacttcatctt
ccatctgctccaatgatggaggatgagaagcttgcagcgcttggcctgtctgatcagctt
ccttctgctcaaggtcttttacaagggcaatcaccattctctgttagtcagcttcctgca
actgcatccaatatagagcagcaagttgttgtcaatcctaagcttcatgctctgggcctg
cagttgcattttcagagtgtacttcctatggctatggatagagctatcaaagagatagtg
tccagcattgtgcagcgcagtgtttctatagcaactcagactaccaaggaacttgttttg
aaggactatgcgatggaatcggatgagacccggatacgtaatgctgcacatttgatggtc
gccagcttgtctggaagccttgctcatgtgacatgcaaggaacctttacgtggttcgata
tcaggccagcttcgtaatttacttcagggattgaccattgcgagtgacctccttgaacaa
gctcttcagcttgttactaatgataatctcgatcttggctgtgccatgattgaacaagca
gctacagagaaggctatacagactattgatggagaaatagctcaacagctggccataagg
aggaaacagagagagggtcccggtgcctcatattttgatgcaagcccctatacacagggt
catatgggtgggttaccagaagctcttcgccctaaacctggccgcttatcccattctcag
caacgcgtttatgaggatttcgtccgcttaccttggcaaaatcaatcaagccaaagctca
aatgctgtgactgctgttccttcaatttcttccagcagtgttggtgtctccagggcgtat
atgtcaggaactggacaattgaactccaacctttactcgtctggtcttgtgaatgcagca
ataactgctgttccgcagccattggaaatatcagaagagacagatacttcatctcaactt
aatagtgcttcctctccccatcttgggacgggtgataatgtcacttctagcagttttgaa
acggaggctattgttgaaccattcacatcggtctcagctcctgaatcgcatccagtggaa
ccatccagtcttgcaaaggaatcaggagcttccttacagccatcaaatgcaacagctacc
tctgaacgtgttggaaatagtatctccgagccgttgctgactactggtgatgcgttggat
aagtaccagattatctctgaaaagcttgaaaacctggtgagtgaagaagctgaagaggca
gaaattcaggcacttattgctgaagttccggtaatcatcctcaaatgtattagtagagat
gaggccgccttggcagtggcccagaaggctttcaagagattgtatgagaatgctacaaat
agtgctcatgttggtgcccatcttgctattctgtcttcaatccgtgatgttagcaaactt
tttgttaaggagctaactagttgggttatttactctgatgaggagagaaagttcaacaaa
gacattacagttggtttgattcgtagtgaactgctaaaccttgccgagtataatgtgcac
atgtctaaattacttgatgctggcagaaacaagtctgctactgaatttgctgtatctctt
attcaaacactggtgataagtgattctagagtcatatctgagctgcagaaccttgttgat
gcacttgctaagattgcagccagaccaggttctcccgagtctttacaacaacttgttgag
attgctaagaaccctggtgctaatgctgctgcgctctctagtgtatcttttgggaaggag
gatggcaacaagcaatctagagacaaaaagattgccgttactgctactggtaccagagaa
gattatggtgtttctgaatgtattgaaccagattctgcaagtttccgcgagcaggtctct
atgttgtttgctgagtggtaccgtatttgtgaaattcctggagcgaatgacgcaactcat
gctcattatatcttgcaattaaaccagagtggcctattaaaaggcgatgaaacttcagag
cgttttttccgcagactcacggaactttctgtttcacattgtctttcgtctgaggtcatg
agttccacccctcagtctcaccaagcacaaccactatcattccttgcaatcgatatctat
gccaaactagtgttctcaattttgaagttttatcctgtggatcaaggatctagtaaatta
ttgctgctgccaaaggttctcgctgtcactgtaagattcatccagagggacgctgatgaa
aagaagatgatctttaatcctagaccatattttaggcttttcattaattggttagtggat
ctcagttccctggaccctgtttttgatggtgcaaattttcaggttttaacagctttagcc
aatgctttccatgcccttcagcccctcaaagttccaggattcagctttgcatggcttgaa
cttgtaagtcaccgaagttttatgcctaaactacttgctggaaatgctcagaaggggtgg
ccttactttcaacgactattggtggatctcttccagtttatggagccctttctgaggaac
gctgagctaggagaaccggtccagtttctgtataaagggactctcagggttttgttggtc
ctcctccatgattttccggagttcctctgtgactaccatttcagcttctgtgatgttatc
cctccaagctgcatacagatgcgaaatataattttaagtgcatttcctcgcaacatgagg
cttcctgatccatcaactcccaacttaaagattgatctactagcagagattagtcaatcc
cctcgcattctttctgaagttgatgcagctcttaaatcaaagcagatgaagggtgatgta
gatgaatacctgaagacaaggcaacaggggtccccatttttgagtgaattaaaacagaag
ttactgctttctccaagtgaagctgccaaggctgggacgcgctacaatgtacccctgatc
aactcccttgtactctatgttggaatgcaggctatccagcagctccaggcaaaaactcct
catgctcagtcgatgcccagtagtgttccatttgcagtattcttggttggtgctgctcta
gatgtattccagactttgataatggacttggacaccgaggggcgttacttgtttttaaat
gcagtcgctaaccaattgcgatacccaaataatcacacacattacttctcctttattctg
ctctacctatttgcggaatcaaaccaggagatgatccaagaacagataaccagggtccta
ttagaacgcctgattgtaaatcgacctcatccatggggtcttctgatcacattcattgaa
ctgataaagaatccaaggtacaatttttggagtcgaccatttacaagatgtgcgccagag
atcgaaaagctgtttgaatcagtctcaagatcttgtggtggccctaaacctgtggatgag
aacgtggtgtcaggtggaatacctgatatccattag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (15)   

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