KEGG   Solanum pennellii: 107004571
Entry
107004571         CDS       T04130                                 
Name
(RefSeq) threonylcarbamoyladenosine tRNA methylthiotransferase isoform X1
  KO
K15865  threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:2.8.4.5]
Organism
spen  Solanum pennellii
Brite
KEGG Orthology (KO) [BR:spen00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:spen03016]
    107004571
Enzymes [BR:spen01000]
 2. Transferases
  2.8  Transferring sulfur-containing groups
   2.8.4  Transferring alkylthio groups
    2.8.4.5  tRNA (N6-L-threonylcarbamoyladenosine37-C2)-methylthiotransferase
     107004571
Transfer RNA biogenesis [BR:spen03016]
 Eukaryotic type
  tRNA modification factors
   Methylthiotransferase
    107004571
SSDB
Motif
Pfam: UPF0004 Radical_SAM TRAM TraT
Other DBs
NCBI-GeneID: 107004571
NCBI-ProteinID: XP_015058303
Position
11:14034582..14047387
AA seq 622 aa
MEDIEDLLVGTVAGVPPGFRLPVPAAVGVNPKQRKKNGVTKLTVVQDSPTPKIPGTQTIY
IKTFGCSHNQSDSEYMAGQLSAFGYALSDNPDEADLWMINTCTVKSPSQSAMDTIISKGR
SAKKPLVVAGCVPQGSRNLKELEGVSIVGVQQIDRVVEVVEETLKGHEVRLLTRKTLPAL
DLPKVRKNKFVEILPINVGCLGACTYCKTKHARGHLGSYTVDSLVCRVKNVIADGVREIW
LSSEDTGAYGRDIGVNLPILLNAIVAELPLNGSTMLRIGMTNPPYILEHLKEIADVLCHP
CVYSFLHVPVQSGSDSVLSAMNREYTVGEFRKVVDTLMELVPGMQIATDIICGFPGETDE
DFAQTVDLIKDYKLAQVHISQFYPRPGTPAARMKKVPSNVVKQRSRELTAVFESFTPYTG
VEGKVERIWITDVASDGVHLVGHTKGYIQVLVIGPESMLGSSAMVKITSVGRWSVFGEVI
EILCQNDKDVPSHWSFDERCSPCTLSEEACACSKEQEPCSATSDCCNQSPTVEATTLLKN
DPNLDNHSSRNLIGWFLRNRKNQSSKKMDLTSSESKEKPIQDLSHWSAWSLVDIALLSGI
LLSLFTIVALFFNLGSRSLSSK
NT seq 1869 nt   +upstreamnt  +downstreamnt
atggaggacattgaagatttgctggtgggtaccgttgccggagtgcctccagggttcagg
ttaccggtgccggcggccgttggagtcaatccaaagcaaaggaaaaagaatggtgtaacg
aagctaacagtagtccaagactctcctacacctaaaatacctggcactcagactatttac
atcaagacattcggatgttctcataatcagagtgattccgaatatatggctggtcagctt
tcagcatttggttatgctttgagtgataaccctgatgaggcagacctctggatgataaat
acatgcacagtcaaatctcctagtcagtctgcgatggatactattataagtaaaggaaga
agtgcaaaaaagccattggtagtagcaggttgtgttcctcaaggaagccgtaatctgaaa
gagctggaaggagttagtatagtaggagttcagcagattgaccgtgtggttgaggttgtg
gaagagactttgaaaggtcatgaagttcggctactaacccggaagacattaccagcactt
gatcttccaaaggtccgaaagaacaagtttgttgagattcttccaataaatgttggttgt
ttaggtgcttgtacttattgcaagactaagcatgcccgtggtcatttaggaagttacaca
gttgacagccttgtgtgccgagtcaaaaatgtcattgctgatggtgtgagggagatctgg
ctgagtagtgaagacaccggggcgtatggtcgtgacattggagttaatcttcctattcta
ttgaatgctatagttgcagagcttcctttgaatggaagtacaatgctccgaattgggatg
accaatcctccttatattcttgagcacttgaaggaaatagctgatgtcttatgtcatcca
tgtgtgtattcttttcttcatgtgccagttcagtcgggtagtgattcagtcttgagtgca
atgaaccgtgaatacactgtaggtgagttcaggaaagtggtggatacattaatggaactg
gtccctgggatgcagattgcaacagatataatttgtggatttcctggtgaaactgatgaa
gattttgctcagacagttgaccttattaaggactacaagcttgctcaagttcatatatca
cagttctatcctaggcctggcactcctgctgcaaggatgaagaaggttcctagtaatgtg
gtgaagcaacgtagtcgtgaattaactgctgtattcgagtcctttactccatatactgga
gtggaaggaaaagtagagaggatatggattactgacgtagcttcagatggggttcatttg
gttggacacactaagggatacattcaggtcctggtgattggtccagaaagcatgctgggt
tcctccgctatggtgaaaataacatccgtaggtagatggtcagtctttggagaagtgatt
gagatcctctgccaaaatgataaggatgtcccctcacattggagttttgatgaaaggtgc
tccccatgcaccctttcagaggaagcttgtgcctgttcaaaagagcaagaaccttgctct
gcaacatctgattgctgcaatcaaagtccaaccgtggaagcaacaacactgctaaagaat
gaccctaatctagataatcatagcagcagaaacttaattggatggtttctgaggaatcgt
aagaatcagtcttccaaaaagatggacttaactagctcggagtctaaggagaagccgata
caggatttaagtcactggagcgcttggagtcttgttgatatagctctacttagtggaata
ttattgagcttgttcacaatagtagctctattttttaatcttggatcaaggagtttgtca
tccaagtaa

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Ontology (3)   
   KEGG BRITE (3)   
Chemical substance (7)   
   KEGG COMPOUND (7)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (4)   
   Pfam (4)   
All databases (27)   

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