KEGG   Solanum pennellii: 107012387
Entry
107012387         CDS       T04130                                 
Name
(RefSeq) protein TRANSPARENT TESTA GLABRA 1-like
  KO
K11805  DDB1- and CUL4-associated factor 7
Organism
spen  Solanum pennellii
Pathway
spen03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:spen00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    107012387
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:spen04121]
    107012387
   03036 Chromosome and associated proteins [BR:spen03036]
    107012387
Ubiquitin system [BR:spen04121]
 Ubiquitin ligases (E3)
  Multi subunit Ring-finger type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     107012387
Chromosome and associated proteins [BR:spen03036]
 Eukaryotic type
  Histone modification proteins
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.3/1.5)
     107012387
SSDB
Motif
Pfam: WD40 ANAPC4_WD40
Other DBs
NCBI-GeneID: 107012387
NCBI-ProteinID: XP_015067710
Position
3:53490866..53500565
AA seq 342 aa
MEKKSGKKSHLRSGNSVTYDSSYPIYAMAFSSFTSSLPNRHPRIAIGSFIEEINNCVDIL
SFDAYNLTLKPIPNLCFEHPYPPTKLMFHPNPFDSLKSNDILASCSDYLRLWEVGDTSIK
DLVTFNKNKNSEYVAPLTSFDWNDVEPRRIGTSSIDTTCIIWDVEIGAFETQIIAHDKEV
YDIAWAEAAVFASVSADGSVRIFDLRMKDYTTIIYESPEPGTQLLKLAWNKHNLRYLAVM
SDSNKIMILDMSSPGRPLVELARHQASFNAIAWSPQSQRHICSAGDDGQALIWELPTVER
PNGIDPMAMYSAGAEINQIQWSAAHHDWIAIAFSNKLQLLNV
NT seq 1029 nt   +upstreamnt  +downstreamnt
atggaaaaaaaatccggtaaaaaatctcatctccgatctggaaattccgttacatatgac
tcatcctaccccatctacgccatggctttttcctccttcacttcttccctccccaatcgc
caccctcgaattgccatcggcagctttatcgaagagatcaacaattgtgttgatattctc
tctttcgatgcatataacctaacccttaagcctattccaaatctctgtttcgaacaccct
tatccacctacgaagctcatgttccatcctaatccttttgattctctcaagtcgaatgac
attcttgcctcttgcagtgactatctccgtctttgggaagttggcgatacttctattaaa
gacctcgtcactttcaataagaataaaaatagtgagtacgttgcccctttgacgtctttt
gattggaatgatgtggagcccagaagaattggtacttccagtatagacactacttgtatc
atctgggatgttgaaataggggcttttgaaactcaaattatagcccatgataaagaggtt
tacgatatagcttgggctgaagctgcggtttttgcttccgtttctgctgatgggtcagtt
cggatttttgatttgaggatgaaggattatactacaattatttatgagagtccagaaccg
ggcactcagttgttgaagctggcttggaacaagcacaacttaagatatctggctgtcatg
tcggatagcaacaagattatgattttagatatgagttctccaggaaggcctctggtggag
ttggctaggcatcaggcgagtttcaatgctattgcttggtctccacagagtcagcgacat
atttgttcggctggggatgacgggcaggcgctcatttgggagttgccaactgttgaaagg
cctaatgggattgatcctatggcaatgtactctgctggagctgagattaatcaaattcag
tggtctgctgcgcaccatgattggattgccattgcgttttctaacaagctgcaattgctt
aatgtataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (13)   

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