KEGG   Solanum pennellii: 107015028Help
Entry
107015028         CDS       T04130                                 

Definition
(RefSeq) autophagy-related protein 16 isoform X1
  KO
K17890  autophagy-related protein 16-1
Organism
spen  Solanum pennellii
Pathway
spen04136  Autophagy - other
Brite
KEGG Orthology (KO) [BR:spen00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04136 Autophagy - other
    107015028
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:spen04131]
    107015028
   03029 Mitochondrial biogenesis [BR:spen03029]
    107015028
Membrane trafficking [BR:spen04131]
 Autophagy
  Autophagosome formation proteins
   Atg12 conjugation proteins
    107015028
 Others
  Rab GTPases of specific organelles
   Auto phagosome
    107015028
Mitochondrial biogenesis [BR:spen03029]
 Mitochondrial quality control factors
  Mitophagy factors
   Autophagy-related proteins
    107015028
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: WD40 ATG16 ANAPC4_WD40 Nup160 eIF2A Cytochrom_D1 DUF5046
Motif
Other DBs
NCBI-GeneID: 107015028
NCBI-ProteinID: XP_015070668
Position
3
AA seq 509 aa AA seqDB search
MAYEEVAIEAIKHALKALRKRHLVEEGAHAPALAALNRPFVLQGSEWKEKAENLEVELQQ
CYKAQARLSEQLVVEVAESRASKSLLQEKETLITDLQNELNQARDECSHLTELLAEKTKG
LELLMAEHQDLKAQLEAMTLRANNAEAENKTLVDRWMLQKMQDAERLNEANALYGDMLDK
VKAASIEKLARQQVDGVVRQSEDGAEFYVESSIPSTCKQRIPAHDGGCASIVFEYNSSKL
ISGGQDRAIKMWDTTSGSLTNSLYGCLGSVLDLSVTHDNKFIIAASSSNNLYVWDANSGR
IRHTLTGHIDKVCAVDVSKFSSRHVVSAAYDRTIKVWDLQKGYCNNTIIFHSNCNSLAFS
MDALTICSGHVDGNLRLWDVQTGKLLSEVAAHSQAVTSVSLSRNGNMILTSGRDNLHNLF
DIRTLEICGTFRSNANRVASNWSRSCISADDGYVTAGSVDGSVHIWSVSNGKMVSTLKEH
TSSVLCCSWSGLGNPLATSDKSGTICIWS
NT seq 1530 nt NT seq  +upstreamnt  +downstreamnt
atggcatacgaagaagttgctatagaagccatcaagcatgctttaaaggccctaagaaag
cggcatttagtggaagaaggggctcatgcccctgctttggctgcactcaataggcctttc
gttttgcagggttcagagtggaaagagaaagctgaaaatcttgaagtagaacttcaacaa
tgttacaaagctcaagcacgactgtcagagcagcttgtggtggaagtagctgaatccaga
gcatcaaaatctttacttcaggagaaggaaactctcattactgaccttcaaaatgagcta
aatcaagcaagggatgaatgttcacatttaactgaacttcttgcggaaaagactaaaggt
ttggaattgcttatggctgagcaccaggaccttaaagcacaacttgaagcaatgactctg
agagcaaacaatgctgaggcagaaaataaaacgttggttgaccgatggatgctgcagaag
atgcaggatgctgagcgccttaacgaggctaatgctctctatggagacatgcttgataag
gtcaaggccgccagtatagaaaaacttgctcgtcaacaagtggacggcgtggtccgccaa
agtgaagatggtgcagaattttacgtagaatcttccatccctagtacatgcaagcaaagg
atccccgcccatgatggtggttgtgcctcgattgtttttgagtataactcaagtaaattg
ataagcggaggtcaggatcgagcaattaaaatgtgggataccacaagcggatcattaacc
aacagtctttatggttgtctgggttctgttcttgatctttccgttacacatgataacaaa
ttcatcatagcagcaagtagttcaaataatttgtatgtgtgggatgcaaattcaggaagg
atacggcacactcttactgggcacatagacaaggtttgtgcagttgatgtgagcaaattt
tcaagtcgccatgtggtgagtgctgcgtatgatcgcacaataaaagtttgggatctgcag
aagggttactgtaacaacactatcatatttcacagtaactgtaacagtcttgcgtttagc
atggatgccctgactatctgttctggtcatgttgatggtaatcttagattatgggatgtt
caaacaggcaagcttctgagtgaagttgctgcacattcacaggctgttacatcagtttca
ctctctcggaatggaaacatgatattaaccagtgggagagacaacttgcacaatctattc
gatatacgcacccttgaaatttgtggcactttcagatcaaatgcaaatcgagttgcatct
aattggagccgatcctgtattagtgccgatgacggttatgttactgcaggttctgttgat
ggatctgttcatatttggtcagtatcaaacggtaaaatggtaagcacattgaaagaacac
acatcctctgtactttgttgttcatggagtggtcttggtaatcctttggccacctcagat
aagagtggaaccatatgtatttggtcatga

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