KEGG   Solanum pennellii: 107023377
Entry
107023377         CDS       T04130                                 
Name
(RefSeq) probable RNA helicase SDE3
  KO
K18422  helicase MOV-10 [EC:5.6.2.5]
Organism
spen  Solanum pennellii
Brite
KEGG Orthology (KO) [BR:spen00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:spen03019]
    107023377
   03036 Chromosome and associated proteins [BR:spen03036]
    107023377
Enzymes [BR:spen01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.5  RNA 5'-3' helicase
     107023377
Messenger RNA biogenesis [BR:spen03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     107023377
Chromosome and associated proteins [BR:spen03036]
 Eukaryotic type
  Gene silencing
   microRNA pathway
    Other miRNA pathway proteins
     107023377
SSDB
Motif
Pfam: AAA_12 AAA_11 MOV-10_beta-barrel AAA_30 AAA_19 ResIII UvrD-helicase AAA_22 DEAD SLFN-g3_helicase AAA_16 Helicase_RecD PIF1 ATPase_2 Mov-10_helical Flavi_DEAD
Other DBs
NCBI-GeneID: 107023377
NCBI-ProteinID: XP_015079544
Position
6:46621388..46628118
AA seq 956 aa
MGTISYKSDDEYSTITDKGDIGFVDFDKYKSAGSYNPNEESDIVIISVPFPLVAGKPKSG
FVGETVVDSVTIENTTNETQELWSIKIYNSKPEDSFTLSLMKPPTDSSDLQYVEEFMESF
SLEDRMLRPGQTLTVWLTCKPKEIGLHTSAVHFNVGDDTIERLVFVLAEDKVSQSLASRR
PFHRDRKKKVPAVDVFAANAFVVGSRPTRAPNRGFRYRLPSYPIPGDIREMIENKQFPDV
IGEGLRRDNYIAYFRTLLAIEEIKMEEDMRDYDMLSVTMKRKGLQFLSLDVPGLAERRPS
LVFGDFIFARLASGDASEITPYQGYIHRVEAEEVYLKFDEEFHINHVPGNLYNVQFSFNR
TGVRRLHQAIEATESLNGEILFPSGISRTRNIQAARLAPNSCMLNKEQTTAVEKILGCKG
GAPYVIHGPPGTGKTRTLIEAIIQVRIMRKDARVLVCAPSNSAADHILEKLVSQQNVEVQ
DNEILRLNALTRPLDDVNPSYLRFCNAEDDSFKCPLLRDLKRYTVIISTYASACLLYSEG
IKRGHFSHIFLDEAGQASEPDTMVPLSHLLKKETVVVLAGDPQQLGPIVFSKDAENYGLA
TSYMERLFECQLYGDLNENYATRLVRNYRCHPVILQLPSEMFYEGELIPCKEDKTFTQTW
VDLLPNKEFPLVFIGIQGCDEREGNNPSWFNRIEASKVVEIIRDLIGNKGLKEEDIGVIT
PYRQQVLKIRTALESFDWANIKVGSVEQFQGQEREVIIISTVRSTIQHNDFDRIHYLGFL
SNPRRFNVAATRARSLLVVVGNPHIICKDPFWNKLLWYCADNDSYKGCFLPEKLEIPQED
FGQANNWSLEDSGQANNWDDVGAQVNNWDCEGAEANDWDQDQVGKVNNWDQDQGGQVNNW
DQDEGELAKNWNEEGTCVNEEKQSFQPSRDVEGTTHQTDYIPDPVMDEAEWSDGWK
NT seq 2871 nt   +upstreamnt  +downstreamnt
atgggcacaatttcttataagtcggatgatgaatactcaactattactgacaaaggagac
atcggatttgtcgactttgacaaatataaatcagctggtagctacaatccaaatgaagag
agtgatatagttattatatctgttccatttccgctggtagcaggaaaacctaaatcagga
tttgttggggaaactgttgttgattcagtcacaatagagaataccaccaatgaaacccag
gagctgtggtcaattaagatctataactcaaaacctgaggattcattcactctttctctg
atgaaacctccaactgatagttctgatttgcaatatgttgaagaattcatggaatccttt
agcttagaggatagaatgttacggccaggtcaaacacttacagtatggctgacttgtaaa
cccaaagaaattggattgcacacatcagctgtgcatttcaatgtgggtgatgacaccata
gaaagattagtttttgtcttggctgaggataaggtttcccagtctctggcttcgaggagg
ccattccacagagacagaaagaagaaagtaccagcagtagatgtttttgctgcaaatgca
tttgttgtgggttcccgtcctacaagggctccaaatcgaggtttcagatacagacttcct
tcatatccaattccaggtgatatacgggaaatgatagaaaacaaacaatttcctgatgtt
attggggaaggtttaaggagagacaattatattgcttattttagaactttactagcaatt
gaagaaatcaagatggaggaagacatgagggactatgatatgttgtcagtcaccatgaag
cgcaaaggactacagttcttgtcccttgatgtcccagggctagccgagaggaggccatca
cttgtttttggagattttatctttgcaaggctagcttctggagatgctagtgagatcacc
ccttaccagggttatatccaccgagttgaggcggaagaagtatatttgaagtttgatgaa
gaattccacatcaaccatgttcctggaaatctgtacaatgtgcaattttcattcaatcgt
acgggtgtgcggaggttacatcaagccattgaagctacagaaagcttaaatggagaaatt
ctctttccatcaggcatatccagaacgagaaatatacaagctgctagactggcacctaat
tcatgtatgcttaacaaggaacaaacaactgcagttgaaaagattcttgggtgcaaagga
ggggctccatatgttatccatgggcctcctggtacaggcaaaacaaggactcttatagaa
gctatcatccaggtacgtattatgaggaaagatgctcgagttcttgtctgtgcaccttca
aatagtgctgcagaccatatacttgagaaacttgtcagtcagcagaatgttgaagtgcag
gacaatgagattcttaggttgaatgcactcacacgtcctttagatgatgtgaatcctagt
taccttcgtttttgcaatgctgaagatgattcttttaagtgcccccttctcagggacctt
aaaagatatacggttattatatctacatatgctagtgcatgtcttctttattcagagggc
atcaaacggggacacttctctcatattttcttggatgaggcaggacaggcatcagagcct
gataccatggttcctctatcacatcttttaaagaaagagacagtagttgtacttgctggt
gacccacagcaacttggtcccattgttttctcaaaagatgctgaaaattatggattggca
acttcatatatggagaggttatttgaatgccagttatatggtgatctcaacgaaaattat
gctaccagactagtaaggaactatcggtgtcatccggtaattctgcagcttccctcagaa
atgttttatgaaggagagttgatcccatgtaaagaagataaaacttttacccagacttgg
gtggacctgcttccaaacaaggaatttccgttggttttcattggcatacagggttgtgat
gaaagagaaggaaacaacccatcatggttcaacaggatcgaagcaagcaaggtggtagag
atcatcagagatctgatagggaacaaaggtctgaaagaggaagatattggggtgataaca
ccttataggcagcaagtactgaaaataagaacagcccttgagagctttgattgggctaat
ataaaggttggcagcgtagagcaattccaaggtcaggagagagaagttattatcatatcg
accgtccggtcgacgattcagcataatgacttcgacagaatccattacttaggattctta
agcaatccgagaaggttcaatgttgctgctacaagagccagatcattgcttgtagttgtc
gggaatccacacatcatctgcaaggatcccttctggaacaagcttttgtggtattgtgca
gacaatgactcctataagggctgcttcttacctgaaaaactggagatccctcaagaggat
ttcggacaagcaaataattggtctctagaggattccggacaagcaaataattgggatgat
gttggggcacaagtaaataactgggactgtgaaggagctgaagctaatgattgggaccaa
gaccaggtgggaaaagttaacaattgggaccaagaccaaggcggacaagtcaacaattgg
gaccaagatgaaggggaactagctaagaattggaatgaggaaggcacttgcgtcaatgaa
gagaaacagagttttcagccatctcgtgatgttgagggtacaacgcaccaaacagactac
atcccggaccctgttatggatgaagctgaatggtctgatggttggaaataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (16)   
   Pfam (16)   
All databases (27)   

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