KEGG   Rhizorhabdus wittichii DC-6: HY78_26900
Entry
HY78_26900        CDS       T05200                                 
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
sphd  Rhizorhabdus wittichii DC-6
Pathway
sphd02024  Quorum sensing
sphd03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sphd00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    HY78_26900
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    HY78_26900
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sphd03019]
    HY78_26900
   03036 Chromosome and associated proteins [BR:sphd03036]
    HY78_26900
Messenger RNA biogenesis [BR:sphd03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     HY78_26900
Chromosome and associated proteins [BR:sphd03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    HY78_26900
SSDB
Motif
Pfam: Hfq
Other DBs
NCBI-ProteinID: ARR57358
Position
complement(5717696..5718205)
AA seq 169 aa
MTRQDRRPAMADKVNNLQDIFLNSVRKTKTPVTMFLVKGVKLQGIITWFDNFSVLLRRDG
QSQLIYKHAISTVMPAHPLDMAEIDKSFEDKKSHLLQEVFLSAVRKAREPVTMFLVNGVM
LQGEIAAYDLFCMLLRRDGLSQLVYKHAISTVQPAHPINLAEIDSTDDD
NT seq 510 nt   +upstreamnt  +downstreamnt
atgacccgccaagaccggagaccggcaatggccgacaaggtcaataatcttcaggatatc
ttcctcaactcggtccgtaagaccaagacccccgtcacgatgttcctcgtgaagggcgtc
aagctccagggcatcatcacctggttcgacaatttctcggtcctgctgcgccgcgacggc
cagtcgcagctcatctacaagcacgccatctcgacggtgatgcccgcgcatccgctcgac
atggcggagatcgacaagagcttcgaggacaagaagtcccacctgctgcaggaggtgttc
ctctcggcggtgcgcaaggcgcgcgagccggtgacgatgttcctcgtcaacggcgtcatg
ctccagggcgagatcgcggcctatgacctgttctgcatgctgctgcggcgggatggtctc
agccagctcgtctacaagcatgcgatctcgacggtgcagccggcgcatccgatcaacctg
gccgagatcgacagcacggacgacgattga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (1)   
   Pfam (1)   
All databases (10)   

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