KEGG   Sphingomonas hengshuiensis: TS85_18230
Entry
TS85_18230        CDS       T03848                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
sphi  Sphingomonas hengshuiensis
Pathway
sphi03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:sphi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    TS85_18230
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sphi03400]
    TS85_18230
Enzymes [BR:sphi01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     TS85_18230
DNA repair and recombination proteins [BR:sphi03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     TS85_18230
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Other DBs
NCBI-ProteinID: AJP73319
UniProt: A0A7U4LGM3
Position
complement(4034458..4036890)
AA seq 810 aa
MADTPLARYNAKRDFGLTEEPEGLVAATGGNRFIVQKHDATRLHWDFRLEVDGVLKSWAV
TRGPSLDPDEKRLAVRTEDHPLSYADFEGTIPKGQYGGGTVMLWDDGVWEPVKGKSAKDL
DKGHLHFRLDGHRMKGEWLLIRLKPRGKEKAENWLLRKLDDGYAGATDALVETGLTSVAT
GRTMQEIAEGAAVVATSGPPPTPPASGRGAKPPPFQPVQLATLVDSVPTGSDWLHEVKYD
GYRALLATGKAAKVYTRSGLDWTEKFPGIAEAAAGLPPGALIDGEIVAFKEGRPDFSTLQ
DAISNGGAGLTLFAFDLLQDAGEDLTALGQLARKERLRALLAGADARIQFSEHIVGAGEQ
LFETMCREGYEGIVSKRAAAPYRGARTKSWLKVKCTRRQEFVIIGWMPSTAKGRGFRSLL
LGVNGPEGLVYAGKVGTGFSTDTLHALRETLDGIATDKAPLSVPRAESRGAHWVKPELVA
EIAFAEFTAEKVVRHASFLGLRGDKKPAEVVAETPVPLPEPVATSHIKISSRDRVIYPEA
GLTKGQLADYYAAVAPIALRWLGNRPISLVRCPQGRAKQCFFQKHDAGSFGDDVHHVDVR
EKDGSTEPYLYIDSLDGMLACVQMGTIEFHGWGSLVADIEKPDRLVFDLDPDEGLDFEAV
KKAAADLKDHLADMGLTSWPLLSGGKGVHVVVPLVPRVEWPEVRSFAERFARALAQAEPD
RFTANLKKASRTGKIFIDYLRNQRGATAVLPYVARAREGAPVAAPVTWTELRTIDSAKLY
SIRDAATLIERAQSRALQGWGEAAQALPDV
NT seq 2433 nt   +upstreamnt  +downstreamnt
atggccgacacgcccctcgcccgatacaatgccaaacgcgatttcggtctgaccgaggag
cctgaggggctggtcgccgcgactgggggcaaccgtttcatcgtgcagaagcatgacgcg
acgcggctccactgggatttccggctcgaagtggacggggtgctcaagagctgggcggtg
acgcgcgggccgagcctcgatccggacgagaaacggctcgcggtgcggaccgaggaccat
cctttgtcctatgccgatttcgaggggacgatccccaagggccaatatggcggcggcacg
gtgatgctgtgggatgacggcgtgtgggagccggtcaagggcaagtcggcgaaggacctc
gacaaggggcatctccacttccggctcgacgggcaccggatgaagggcgagtggctgctg
atccggctgaagccgcgcggcaaggaaaaggccgagaactggctgctgcgcaagctcgac
gacggctatgcgggcgcgaccgacgcgctggtcgagaccgggctgaccagcgtcgccacc
gggcggacgatgcaggagattgccgagggcgcggcggtcgtggctacctcaggccctccc
ccgacccctcccgcaagcggaaggggagccaaaccgccccccttccagccggtgcagctt
gcgacgctggtggacagcgttccgaccggcagcgactggctgcacgaggtgaagtatgat
ggctatcgcgcgctgctcgccacgggcaaggcggcgaaggtctacacccgctcgggcctc
gactggaccgagaaatttcccggcatcgccgaggcggcggcgggccttccccccggcgcg
ctgatcgatggcgagattgtcgcgttcaaggagggcaggcccgatttctcgacgctccag
gacgctatttcgaacggaggcgcggggttgacgctattcgcgttcgacctgctccaggac
gcgggcgaggacctcaccgcgctcgggcagctcgcccgcaaggagcggctccgcgcgctg
ctggcgggtgcggacgcgcgcatccagttttccgagcatatcgtcggcgcgggcgagcaa
ttgttcgagacgatgtgccgcgaaggctatgaggggattgtgtcgaagcgcgccgccgcg
ccctatcgcggcgcgcggaccaagagctggctcaaggtcaaatgcacccgccgccaggaa
ttcgtgattatcggctggatgccgagcaccgcgaaggggcgcggcttccgctcgctgctg
ctcggcgtcaacgggcccgaggggctggtctatgcggggaaggtcgggaccgggttcagc
accgatacgctccacgcgctgcgcgagacgctggacgggattgcgaccgacaaggcgccg
ctgagcgtgccgcgtgccgagtcgcggggggcgcactgggtgaagcccgagctggtcgcc
gagatcgcctttgccgaattcactgccgagaaggtcgtgcgccatgcgagtttcctcggg
ctgcgcggcgacaagaagccggcggaggtggtcgccgaaacccccgtgccgctccccgag
cccgtcgcgacgtcgcacatcaagatcagcagccgcgaccgggtgatctatcccgaggcg
gggctgaccaaggggcagctcgccgattattacgccgcggtcgcgccgatcgcgctgcgc
tggctgggcaatcgcccgatcagcctggtccgctgcccgcaggggcgggcgaagcaatgt
ttcttccagaagcacgatgccggcagctttggcgacgacgtccaccatgtcgatgtgcgc
gagaaggacgggtcgaccgagccctatctctatatcgacagcctcgacgggatgctggcg
tgcgtccagatggggacgatcgagtttcacggctggggcagcctggtcgccgatatcgag
aagcccgatcggctggtgttcgacctcgaccccgatgaggggctcgatttcgaggcggtg
aagaaggcggcggcggacctcaaggaccatctcgcggacatggggctgacgagctggccg
ctgctgtcggggggcaagggcgtgcatgtcgtggtgcctttggtcccgcgtgtcgaatgg
cccgaggtgcgcagcttcgccgaacgcttcgcgcgcgcgctggcccaggccgagcccgat
cgcttcaccgccaacctgaaaaaggccagccggacggggaagatcttcatcgattacctg
cgcaatcagcgcggcgcgaccgccgtgctcccctatgtcgcccgcgcccgcgaaggcgcg
ccggtggcggcgcccgtcacctggaccgagctgcgcaccatcgacagcgccaagctctac
tcgatccgcgacgccgcgacgctgatcgagcgcgcgcaaagccgggcgttgcagggatgg
ggcgaggcggcgcaggcgctgccggacgtatag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (21)   

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