KEGG   Sphingorhabdus lutea: LPB140_07775
Entry
LPB140_07775      CDS       T04602                                 
Name
(GenBank) RNA-binding protein hfq
  KO
K03666  host factor-I protein
Organism
sphl  Sphingorhabdus lutea
Pathway
sphl02024  Quorum sensing
sphl03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sphl00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    LPB140_07775
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    LPB140_07775
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sphl03019]
    LPB140_07775
   03036 Chromosome and associated proteins [BR:sphl03036]
    LPB140_07775
Messenger RNA biogenesis [BR:sphl03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     LPB140_07775
Chromosome and associated proteins [BR:sphl03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    LPB140_07775
SSDB
Motif
Pfam: Hfq
Other DBs
NCBI-ProteinID: APG62706
UniProt: A0A1L3JC52
Position
complement(1637096..1637581)
AA seq 161 aa
MSDHNNGLQDRFLNSLRKTKTPASIFLVKGVKLQGIVTWFDNFSILLRRDGQSQLVYKHS
ISTIMPGAEVELDIAEKDGTKNKRKGLQDIFLYAMQDKEEQVTMFLVNGVMLQGHILSYD
LFSVLLERDNMTQLVYKHALSTIQPATTVNLAEYNIDEDSL
NT seq 486 nt   +upstreamnt  +downstreamnt
atgtcagatcacaataatggattacaagatcgctttttaaacagcctacgcaaaaccaaa
actcccgcgtcgatattcttggtaaagggtgttaaattacaagggattgtaacttggttt
gataatttttcaatattattacggcgtgatggccaatcgcaacttgtttataaacattca
atttcaacaattatgcccggcgcagaggttgaactcgacatagctgaaaaagatggcacc
aaaaataaacgtaaagggctgcaggatatttttctttatgcgatgcaggataaagaagaa
caagttactatgtttttggtcaatggcgtgatgttgcaagggcatattttatcctatgat
cttttttcggtgttgttagaacgtgataatatgactcagctggtctataaacatgcattg
tccacaatacagccggcaacaacggtgaatttagccgaatataatattgatgaggatagc
ctttga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (1)   
   Pfam (1)   
All databases (11)   

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