KEGG   Sphingorhabdus lutea: LPB140_11010
Entry
LPB140_11010      CDS       T04602                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
sphl  Sphingorhabdus lutea
Pathway
sphl03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:sphl00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    LPB140_11010
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sphl03021]
    LPB140_11010
   03400 DNA repair and recombination proteins [BR:sphl03400]
    LPB140_11010
Enzymes [BR:sphl01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     LPB140_11010
Transcription machinery [BR:sphl03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     LPB140_11010
DNA repair and recombination proteins [BR:sphl03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      LPB140_11010
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45 RNA_pol_Rpb2_2 RNA_pol_Rpb2_1 B
Other DBs
NCBI-ProteinID: APG63226
UniProt: A0A1L3JDN2
Position
2315225..2319367
AA seq 1380 aa
MATKTAPLSRKKRIRKIFGDIHEVIEMPNLIEVQRESYEQFLRSDPSIGYVSGLEKTLRS
VFPVRDFAGTSELDFVHYELEEPKYDVEECRQRGITYAAPMKVTLRLIVFEVDPDTETRS
VLDIKEQDVYMGDMPLMTENGTFFVNGTERVIVSQMHRSPGVLFDHDRGKTHSSGKFLFA
ARVIPYRGSWLDFEFDAKDIVNVRIDRKRKLPVTTLLYGLGLDDEAILDHFYDRVTFERK
KDGWKIPFNADQWRATKPAFDLVDADSGEVVFPLGEKITPRAANKAVKDGLTSLLIPTEE
IFGRYSAFDLINEKTGEIYIEAGDEITAENLEKLDKAGLDVLELLDIDHVITGAWIRNTL
KADKAENRDMGLDAIYRVMRPGEPPTRETAEALFAGLFFDPERYDLSAVGRVKLNMRLDL
DAADDVVTLRNEDILAVVKELVNLKDGKGEVDDIDNLGNRRVRSVGELLENQYRVGLLRM
ERAVKERMSSVDVSTVMPNDLINAKPAVAAVREFFGSSQLSQFMDQTNPLSEVTHKRRVS
ALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLASFSRVNKYGFIETPY
RKIIDGKVTDEVVYLSAMEEQKHTVAQANAELNEDGSFKEELVSSREGGEFLIAPREQIT
LMDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLVKAEAPLVGTGMEETVARD
SGAAIGARRTGIVDQVDATRIVVRVTGEVEPGKSGVDIYTLQKFQRSNQNTCINQRPLVN
VGDEVIEGDIIADGPSTELGELALGKNSLVAFMPWNGYNYEDSILISERIVKDDVFTSIH
IEEFEVMARDTKLGPEDITRDIPNVGEEALRNLDEAGIVYIGAEVHPGDILVGKITPKGE
SPMTPEEKLLRAIFGEKASDVRDTSMRLPPGVAGTVVEVRVFNRHGIDKDERAMAIEREE
ISRLAKDREDERSILNRATYNRLRDMLIGQTAIAAPKGIKKGSQLDEEMLEEVEKHEWWK
IAVADDKVQADLEAVKGQYDDAVKLIVEKFEDRREKLERGDEMAPGVLKMVKVFVAVKRK
LQPGDKMAGRHGNKGVISRILPQEDMPFLEDGTPVDIVLNPLGVPSRMNVGQIFETHLGW
ASRGLGQQIQKALTDWRHANPNPETAAPPEAVRERLLNAYGETYAAELNRRSDTEVVELA
KLLAQGVPMGTPVFDGAREADVSHMLKLADLDTSGQVDLFDGRTGDKFDRKVTVGYIYML
KLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAYTLQEMLTV
KSDDVIGRTKVYEAIVKGDDAFDAGIPESFNVLVKEMRSLGLNVELKSHDDDDDIAEAAE
NT seq 4143 nt   +upstreamnt  +downstreamnt
atggcaacaaagacagctcccctgtcgcgcaaaaagcgcattcgtaaaattttcggtgat
attcacgaagtcatcgaaatgcccaatttgattgaggtgcaacgtgaaagctatgaacag
tttttacgctctgacccgtcaattggctatgtttcgggtttggaaaaaactctacgttcg
gtatttcctgtgcgcgattttgcaggtaccagcgaattggattttgtccattatgaattg
gaagaaccgaaatatgatgttgaggaatgccgtcaacgcggcataacctatgctgcgcca
atgaaggtgacattgcgtcttattgtttttgaagttgatcctgacactgaaacacgttcg
gttttggacattaaagaacaagatgtttatatgggcgacatgccattaatgaccgaaaat
ggcactttcttcgtcaatgggacagagcgcgttatcgtttcccaaatgcaccgttcgccc
ggcgtattatttgaccatgatcgcggcaaaacacatagcagcggcaagtttttgttcgca
gcgcgcgttattccatatcgtggttcatggcttgattttgaatttgatgccaaagacatc
gtcaatgtgcggattgaccgtaagcgtaaattgcccgtcaccaccttgctatatggtctt
ggtttggatgatgaagcgattttggatcatttttatgaccgcgtaacatttgaacgtaaa
aaagatggctggaaaattccatttaacgccgatcaatggcgcgcgacaaaacctgcattt
gatttggttgacgcagatagcggcgaagttgttttcccattgggtgagaaaatcaccccg
cgcgctgcgaataaagcggtgaaagacggcctgacatcattgttaatcccgaccgaggaa
attttcggccgttattcagcatttgatttaatcaatgaaaaaaccggtgagatttatatt
gaagcgggtgatgaaattaccgccgaaaatcttgaaaaattggacaaggccggattggat
gttctggaattattggacattgaccatgtgattaccggcgcgtggatccgcaacacatta
aaagcggacaaggcggaaaatcgcgacatgggtctggacgcaatttaccgtgtcatgcgt
cctggtgaaccaccaacgcgcgaaaccgcagaggctttatttgctggtttattctttgat
ccagagcgttatgatctttctgcggttggccgcgtgaaattgaacatgcgtcttgatttg
gatgccgccgatgatgttgtcaccctgcgcaacgaagatattttggcggttgtaaaagaa
ttggtcaatttgaaagacggcaaaggcgaggttgacgatattgacaatcttggcaaccgc
cgtgttcgttcggttggcgaattgttggaaaatcaatatcgtgttggcttgctgcgcatg
gaacgtgcggtaaaggagcggatgagcagcgtggacgtgtccaccgtgatgccaaatgat
cttatcaacgcgaagccagcggttgctgcggttcgtgaatttttcggctcatcacagctt
tcacaatttatggatcaaaccaatcccctatccgaagtgacgcataagcgccgcgtatcg
gcacttgggcctggtggtttgacccgtgaacgtgccggttttgaggttcgtgacgttcac
ccaacccattatggccggatttgcccaattgaaacgccagagggtccgaatattggtttg
attaactcgcttgcttcatttagccgcgtgaacaaatatggctttattgaaacgccatat
cgcaaaatcatcgacggcaaagtcaccgacgaggtggtatatctttccgcgatggaagaa
caaaagcacaccgtagcgcaggcaaatgcggagttgaacgaagatggcagctttaaagag
gaattggtttcttcgcgtgaaggcggcgaatttttaatcgccccgcgtgaacaaatcacc
ctgatggacgttagtccgaaacagcttgtttcggtggcggcatcgttaatccccttcctt
gaaaatgatgacgcgaaccgcgctctcatgggatcaaacatgcaacgtcaggctgtgcca
ttggtaaaggcagaggcgcctttggttggcacagggatggaagaaaccgtggcccgcgat
tctggcgcggccattggcgcacgccgcaccggtattgttgaccaagtggacgcaacacgt
attgttgttcgcgtgaccggagaggttgaacctggaaaatcaggcgtagatatttacaca
ttgcaaaaattccaacgttccaaccaaaatacctgcatcaaccaacgcccgttggtaaat
gttggtgatgaggttatcgaaggtgatattattgctgatggtccatcaaccgaacttggc
gaattggcattgggcaaaaacagccttgtcgcctttatgccatggaatgggtataattat
gaagatagtatcctgatttcagagcgtatcgtgaaggatgatgtgttcacatccatccat
atcgaagaatttgaagtcatggcccgcgataccaaattagggccagaggatattacccgc
gacattccaaatgtgggtgaagaagcgcttcgtaatcttgacgaagcgggcattgtttat
attggtgcagaggttcaccctggtgatattttggtgggtaaaatcacaccgaagggcgaa
agccccatgacgccagaggaaaaattgctgcgtgcgatttttggtgaaaaggcatctgat
gttcgcgatacatccatgcgcttgccccctggtgtggccggtacagtggttgaagttcgc
gtgtttaaccgccacggcattgataaagatgaacgtgcaatggcgattgagcgcgaagaa
attagccgtcttgccaaagaccgtgaggatgaacgttcgattttgaaccgtgcgacctat
aaccgccttcgtgacatgttaattggccaaacagcaattgctgcgccaaagggcattaag
aaaggcagccagcttgacgaagaaatgctggaagaagtcgaaaagcatgaatggtggaaa
atcgccgttgctgatgacaaggttcaggccgatttagaagccgttaagggccaatatgat
gatgcggtaaagttaatcgtcgagaaattcgaagatcgccgtgaaaaattggaacgtggt
gacgaaatggcaccgggcgttttgaaaatggttaaagtatttgtcgcggtgaagcgtaag
ctgcaaccgggtgataaaatggccggacgtcacggtaataaaggtgttatttcgcgcatc
ttgccacaagaggatatgccattccttgaggatgggacccctgttgatatcgtgttgaac
ccattgggtgtgccttcgcggatgaatgttggacaaatttttgaaacccaccttggttgg
gcgtcacgtggtttgggtcaacaaattcaaaaggcattgaccgattggcgtcatgccaac
ccgaatccagaaaccgctgccccgcctgaggcagtgcgagagcgtttgttaaatgcctat
ggtgaaacctacgcagccgaactgaaccgccgcagcgatacagaggtggttgagcttgcc
aaattattggcccaaggtgttcctatgggcacaccagtatttgacggcgcacgtgaagct
gatgtgtcgcacatgctgaaattggccgatttggatacatctggtcaggttgatttgttc
gatggccgcacgggtgataaattcgaccgcaaggtgacagtaggctatatttacatgctg
aaactgcatcacttggttgatgataaaatccacgcccgttcaatcggaccatattcactc
gtcacgcagcaaccacttggcggtaaagcgcaatttggtggccaacgctttggtgagatg
gaggtctgggcgctgcaagcatatggcgcagcatatacattgcaggaaatgttgaccgtg
aaatcggatgacgtgattggccgtaccaaagtatatgaagcaattgtaaagggcgacgac
gcatttgatgcgggtatcccagaaagctttaatgttttggtcaaggaaatgcgttcgctt
ggtttgaatgttgagttaaaatcacatgatgatgacgacgacattgccgaggcggcggaa
taa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (18)   

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