KEGG   Sphingobium sp. RAC03: BSY17_1409
Entry
BSY17_1409        CDS       T04461                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
sphr  Sphingobium sp. RAC03
Pathway
sphr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sphr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BSY17_1409 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sphr03021]
    BSY17_1409 (rho)
   03019 Messenger RNA biogenesis [BR:sphr03019]
    BSY17_1409 (rho)
Transcription machinery [BR:sphr03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     BSY17_1409 (rho)
Messenger RNA biogenesis [BR:sphr03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     BSY17_1409 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N ATPase_2 Spore_III_AA AAA_22 OB_RNB GpA_ATPase NACHT AAA_25 AAA_14 AAA
Other DBs
NCBI-ProteinID: AOF96592
UniProt: A0A1B3MU19
Position
complement(1444551..1445807)
AA seq 418 aa
MHLKDLKKTAPADLVQLAEELGVEGASTLRKQDLMFAILKAEAENGEQIMGEGTIEVLPD
GFGFLRSPEANFLAGPDDIYVSPNQVRRFGLRTGDTVDGEIRAPKDGERYFALVKLNTVN
FDDPDVVRHRVNFDNLTPLYPESKLTLDPGDPTQKDKSARVIDIVSPQGKGQRTLIVAPP
RVGKTVMLQNIAKAITDNHPEVFLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPATRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRF
FGAARNIEEGGSLSIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRIFPALDV
GKSGTRKEELLVDKGTLSKMWVLRRILMQMGTIDAMEFLLDKMKDSKTNENFFDSMNQ
NT seq 1257 nt   +upstreamnt  +downstreamnt
atgcatctcaaggaccttaagaaaacagcgcccgccgacctcgtgcagcttgctgaggaa
ctgggcgtcgagggcgcgtcgaccctgcgcaagcaggatctgatgttcgcgatcctcaag
gctgaggcggaaaatggcgagcagatcatgggcgaaggcacgatcgaagtgctgcccgat
ggcttcggtttcctgcgcagcccggaagcgaacttcctggccggtcccgacgatatctat
gtgtcccccaaccaggtccgtcgcttcggcctgcgcaccggcgacacggtggacggcgaa
atccgcgcgcccaaggacggcgagcgctatttcgctttggtgaagctcaacaccgtcaat
ttcgacgatcccgatgtggtccgtcatcgcgtcaatttcgacaatctgacgccgctctat
cccgaatccaagctgacgctcgatccgggcgatccgacccagaaggacaagtcggcgcgc
gtcatcgacatcgtctcgccccagggcaagggccagcgcacgctgatcgtcgcgccgccg
cgcgtcggcaagacggtgatgctgcagaatatcgccaaggccatcaccgacaatcatccc
gaagtcttcctgatcgtcctgctgatcgatgagcgcccggaggaagtcaccgacatgcag
cgcagcgtgaagggcgaggtcgtgtcctccaccttcgatgagcctgctacccgccacgtc
caggtcgccgaaatggtgatcgaaaaggccaagcgcctggtcgagcataagaaggatgtc
gtcatcctgctcgattccatcacccgcctcggccgcgcctacaacaccgtcgtcccgtcg
tcgggcaaagtgctgaccggcggcgtggacgctaatgcgctccagcggcccaagcgcttc
ttcggtgccgcgcgcaatatcgaggagggcggctcgctctccatcatcgccaccgcgctg
atcgacactggcagccgcatggacgaagtcatcttcgaagaattcaagggcaccggtaac
tcggaaatcgtgctggatcgcaaggtcgccgacaagcgcatcttcccggcgctcgacgtt
ggcaagtccggcacccgcaaggaagagctgctggtcgacaagggcacgctcagcaagatg
tgggtgctgcgtcgcatcctgatgcagatgggcacgatcgacgcgatggagttcctgctc
gacaagatgaaggattcaaagaccaacgagaatttcttcgattcgatgaaccagtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (12)   
   Pfam (12)   
All databases (21)   

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