KEGG   Sphingobium sp. RAC03: BSY17_213
Entry
BSY17_213         CDS       T04461                                 
Symbol
topA
Name
(GenBank) DNA topoisomerase I
  KO
K03168  DNA topoisomerase I [EC:5.6.2.1]
Organism
sphr  Sphingobium sp. RAC03
Brite
KEGG Orthology (KO) [BR:sphr00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sphr03032]
    BSY17_213 (topA)
   03400 DNA repair and recombination proteins [BR:sphr03400]
    BSY17_213 (topA)
Enzymes [BR:sphr01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     BSY17_213 (topA)
DNA replication proteins [BR:sphr03032]
 Prokaryotic type
  DNA Topoisomerases
   BSY17_213 (topA)
DNA repair and recombination proteins [BR:sphr03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      BSY17_213 (topA)
SSDB
Motif
Pfam: Topoisom_bac Toprim_C_rpt Toprim zf-C4_Topoisom SpoIIE Toprim_4 HC2
Other DBs
NCBI-ProteinID: AOF95907
UniProt: A0A1B3MS81
Position
complement(220408..222996)
AA seq 862 aa
MQLVIVESPAKAKTIEKYLGGDFHVLASYGHIRDLPAKDGSVDPDDGFAMSWENYGDKGK
QLKAISDAAKKATRLILATDPDREGEAISWHVQEVLRAKKALPAVVDRVTFNAITKAAVL
DAMAKPRALDEDLIDAYRARRALDYLVGFTLSPVLWRKLPGAKSAGRVQSVALRLVVERE
REIESFNPQEYWSVTAEMEQDGTAFTARLVRWKGEKIERLTIGKEGDAMAAKADVEAGRF
TVERVETKPLTRNPPPPFTTSTIQQEAARKLGFSASHTMRIAQQLYEDGAITYMRTDGVQ
MDGSAISAARAAIAARYDGGYVPDKPRIYQTKAKNAQEAHEAIRPTDFSRDKVGSGDHSR
LYDLVFKRALASQMASARLERTTIDMNDATGTHTLRATGQVVIFPGFLALYEEGRDDSDD
EDGKLLPRMAEGDAPAKKKVMADQHFTQPPPRYSEASLVKRLEELGIGRPSTYASTLQVL
KDRDYVRIEKNRFFAEESGRLVTAFLERFFERYVSYDFTAGLEDELDDISGGRAQWQEVL
EAFWRDFKPKTAEIMEQKPSDITAELDKFLEPMLFPPKADGSNPRACPLCADGQLSLRGG
RFGAFIACSNYPECKFTRKFGQPGGKDGEDTGPEVLGQHPETGQDIVKKVGRFGPYIEMG
EGKEAKRGSIPKDLPDGELTLDWGIKLLSLPREVGLHPETGLPIVANIGRFGPYLLHDGK
YGRLANTAEIFEVGMNSAVVKLAEAATRGPRSAGREPLKVLGAHPRTELEIKLMEGRYGV
YVTDGTTNATLPKTMDKDALTLEEAAQLIDARAAAAPAKKGAKKKAPAKKAAPKKDAAKK
DGAAKKPAAKKAPAKKKAAAAE
NT seq 2589 nt   +upstreamnt  +downstreamnt
atgcagcttgtcatcgttgaatcgccggccaaggcgaagactatcgaaaaatatctgggc
ggggatttccatgtgctcgccagctatggccatattcgcgacctgcctgcgaaggatggg
tcggtggacccggacgacggctttgcgatgtcgtgggaaaattatggcgacaagggcaag
cagctcaaggccatcagcgatgccgccaagaaggctacgcgcctcatcctcgcgactgac
cctgatcgcgaaggggaagcgatcagctggcatgtgcaggaagtgctgcgcgccaagaag
gcgctgcccgccgtcgtggaccgggtgacgttcaacgcgatcaccaaggcggcggtgctg
gacgcgatggccaagccgcgcgcgctggacgaggatctgatcgacgcataccgcgcacgc
cgggcgctcgactatctggtgggcttcaccctgtcgccggtgctgtggcgcaagctgccc
ggtgccaagtcggcgggccgcgtgcaatcggtcgcgttgcggttggtggtcgagcgcgag
cgcgagatcgaatccttcaatccgcaagaatattggtcggtcacggcggagatggagcag
gacggaaccgccttcactgcgcgcctcgtccggtggaagggcgagaagatcgagcggctg
acgatcggcaaggaaggcgacgcgatggccgccaaggccgatgtcgaagccggacgcttc
accgtcgaacgggtcgagaccaagccgcttacccgcaacccgccgccgcctttcaccact
tcgacgattcagcaggaagcggcgcgcaagctcggcttctcggccagccatacgatgcgg
atcgcgcagcagctctacgaagatggcgcgatcacctatatgcgaaccgatggcgtgcag
atggacggcagcgccatttccgccgcgcgcgccgcgatcgcggcgcgctatgatggcggc
tatgtgccggacaagccacgtatctatcagaccaaggcgaagaatgcgcaggaagcgcat
gaagccatccgcccgaccgatttttcgcgcgacaaggtgggcagcggcgaccattcgcgc
ctctacgacctggtgttcaagcgcgcgctcgccagccagatggcgtcggcacggctggaa
cgcaccaccatcgacatgaacgacgccaccggcacgcatacgctgcgcgctacggggcag
gtggtgatcttccccggcttccttgctttgtatgaggaagggcgcgacgacagcgacgac
gaagacggaaagttgctgccccgcatggcggaaggcgatgcgcctgcgaagaagaaggtc
atggcggaccagcatttcacccagccgccgccgcgctattccgaagccagcctcgtcaag
cggcttgaggagctggggatcgggcgtccgtccacctatgcctcgacgttgcaggtgctc
aaggaccgcgactatgtgcggatcgagaagaaccgctttttcgccgaggaaagcgggcgg
ctggtaacggcctttctggagcgctttttcgaacgctatgtgtcctatgatttcaccgcg
ggcctggaggacgagctggacgatatttccggcggtcgtgcccagtggcaggaagtgctc
gaagccttttggcgcgatttcaagcccaaaacggccgaaatcatggagcagaagccgtcg
gacatcaccgccgaactggacaagttcctcgaacccatgctgttcccgcctaaggccgat
ggcagcaatccgcgcgcctgcccactgtgcgcggacgggcaattgtcgctgcgcggcggc
cggttcggcgcgttcatcgcctgttccaactatcccgaatgtaaatttacgcggaaattc
ggtcagccgggcggcaaggatggcgaagatacagggccggaggtgctgggccagcatccc
gaaaccgggcaggacatcgtcaagaaggtcggtcgcttcggcccctatatcgagatgggc
gagggcaaggaggccaagcgcggatcgatccccaaggatctgcccgatggcgaattgacg
ctcgattggggcatcaaactgctgagcctgccgcgcgaagtcggtttgcatcccgaaacc
gggctgccgatcgtggcgaatatcggccgcttcggtccctatctgctgcatgacggcaaa
tatggtcgcctggccaataccgccgagattttcgaagtcggcatgaacagcgcggtcgtg
aagctggccgaggccgcgacgcgcgggccgcgcagcgccgggcgcgagccgttgaaggtg
ctgggtgcccatccgcgcaccgagctggaaatcaagctgatggaagggcgctacggcgtc
tatgtcacggatggcacgaccaatgcgaccctgcccaagacgatggacaaggatgcactg
acgctggaggaagccgcgcagctgatcgatgcccgtgcggcggcggctccggcgaagaag
ggcgcgaaaaagaaagctccggcgaagaaggcagcgcccaaaaaggatgcggccaagaag
gacggggcagcaaagaagcccgctgccaagaaggcaccggccaagaagaaggcggccgcg
gcggaataa

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Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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