KEGG   Sphingobium sp. TKS: K426_07580
Entry
K426_07580        CDS       T04965                                 
Name
(GenBank) 2'-5' RNA ligase
  KO
K01975  RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
Organism
spht  Sphingobium sp. TKS
Brite
KEGG Orthology (KO) [BR:spht00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:spht03016]
    K426_07580
Enzymes [BR:spht01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.4  Phosphoric-diester hydrolases
    3.1.4.58  RNA 2',3'-cyclic 3'-phosphodiesterase
     K426_07580
Transfer RNA biogenesis [BR:spht03016]
 Prokaryotic type
  tRNA spricing factors
   Other tRNA splicing factors
    K426_07580
SSDB
Motif
Pfam: LigT_PEase 2_5_RNA_ligase2 AKAP7_NLS
Other DBs
NCBI-ProteinID: AMK22463
UniProt: A0A126RJP8
Position
1:complement(1488398..1488943)
AA seq 181 aa
MHRLFVAIRPPADIRNGLLALMSGIMDARWQDDDQLHITLRFVGEVDRHRTNDLIDALGN
IRFSPFEIALGGIGCFDRKGQVHTLWAGVQPRDALAQLHQKVDRVCVNTGLSPDNRSYFP
HVTLARFGRTAGSMEAFMALHAAFASAPFTVDAFALYESHLGQAGSTYHVIERYRADIQT
P
NT seq 546 nt   +upstreamnt  +downstreamnt
atgcatcgcctgttcgtcgccatccgcccgccagccgatatccgcaacggactgctcgcc
ctgatgagcggcatcatggatgcgcgctggcaagatgacgaccagttgcacatcaccctg
cgcttcgtgggcgaagtggaccgccaccggaccaatgatcttatcgacgcgctcggcaat
atccgcttttcaccgttcgagatcgcccttggcggcatcggctgtttcgaccgcaagggc
caggtccatacactctgggcaggcgtacagccacgtgatgctctcgcccagcttcatcag
aaggtcgaccgtgtctgtgtcaataccggcctctcaccggacaatcgaagctatttccct
catgtcacgctggcccgcttcggtcggacagccggttccatggaggcgttcatggccctc
catgccgcttttgcaagcgcgcccttcaccgtcgatgcattcgccctgtatgaaagccat
ctcggccaggcaggttcgacctatcatgtgatcgaacgctatcgggccgatattcagacg
ccgtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical substance (3)   
   KEGG COMPOUND (3)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (16)   

Download RDF
DBGET integrated database retrieval system