KEGG   Uncultured Sphingopyxis sp. UC10: SPPYR_3236
Entry
SPPYR_3236        CDS       T05531                                 
Symbol
rpoB
Name
(GenBank) RNA polymerase, beta subunit
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
sphu  Uncultured Sphingopyxis sp. UC10
Pathway
sphu03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:sphu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    SPPYR_3236 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sphu03021]
    SPPYR_3236 (rpoB)
   03400 DNA repair and recombination proteins [BR:sphu03400]
    SPPYR_3236 (rpoB)
Enzymes [BR:sphu01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     SPPYR_3236 (rpoB)
Transcription machinery [BR:sphu03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     SPPYR_3236 (rpoB)
DNA repair and recombination proteins [BR:sphu03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      SPPYR_3236 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1 Phage_Mu_Gam DUF4292
Other DBs
NCBI-ProteinID: SBV34351
UniProt: A0A1Y5PWJ5
Position
SPPYR:complement(3386934..3391112)
AA seq 1392 aa
MATKAKSVGKALEATASKRIRKLFGNIHEAVEMPNLIEVQRESYEQFLRSDPSIGYVSGL
EKTLRSVFPIRDFAGTAELDFVHYELEEPKYDVEECRQRGITYAAPMKVTLRLIVFEVDS
ETDTRSVLDIKEQDVYMGDMPLMTENGTFFVNGTERVIVSQMHRSPGVLFDHDRGKTHSS
GKFLFAARVIPYRGSWLDFEFDAKDIVNVRIDRKRKLPVTSLLYALGMSGEEILNHFYDR
LVFERAENGWKVPFVVENWRGSKPAFDVVDAKTGEVVFAAGHKISPRLANKAAKDGLDTL
LIPTEEIFGRYSAYDLINEATGEIYIEAGDEVSADNLEKLDAAGIDKLVLLDIDHNNTGP
WIRNTLKADKAEDRDQALSDIYRVMRPGEPPTRETAEALFGGLFFDAERYDLSAVGRVKL
NMRLGLDAEDTVTTLRSEDILAVVKELVNLKDGKGEIDDIDNLGNRRVRSVGELLENQYR
VGLLRMERAVKERMSSVDVSTVMPNDLINSKPISAAIKEFFGSSQLSQFMDQTNPLSEVT
HKRRVSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYG
FIETPYRRIVDGKVTNEVVYLSAMEESKHTVAQANADLNPDGSFIDELISAREAGEFLMA
PRDQITLMDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLRAEAPVVGTGME
ETVARDSGAAIAARRGGVIDQVDATRIVIRATDMVEPGKSGVDIYRLQKFQRSNQNTCIN
QRPLVKVGDVVKSGDIIADGPSTELGELALGKNVLVAFMPWNGYNYEDSILISERIVKDD
VFTSIHIEEFEVTARDTRLGPEDITRDIPNVGEEALRNLDEAGIVYIGAEVGPGDILAGK
ITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVSGTVVEVRVFNRHGIDKDERAI
AIEREEIERLKQDADDERAILNRATFSSLKDLLIGQTTSAVPKGLKKGDTVTEEMLVELD
RADWWKLAVVEDNAQTALEAIKAQYDDAIKRINAKYEDRVEKLQRGDELAPGVLKMVKVF
VAVKRKLQPGDKMAGRHGNKGVISRILPNEDMPFLEDGTHVDIVLNPLGVPSRMNVGQIL
ETHLGWASRGLGRQVTQALDEWRDANPDAVGGQMPEAVRDALEHVYGAEYLEDIKSRDAD
SIVELADNLRVGVPFATPVFDGAKEADVSNMLTLAGLHESGQSDLYDGRTGDKFDRKVTV
GYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAYTL
QEMLTVKSDDITGRTKVYEAIVKGDDTFEAGIPESFNVLVKEMRSLGLNVELSSYADEDD
DEGPEALPEAAE
NT seq 4179 nt   +upstreamnt  +downstreamnt
atggcgaccaaggcgaagtcggtgggcaaggccctcgaagcaaccgcaagcaagcgaatc
cgcaagctgttcggcaacatccacgaagcggtggagatgcccaacctcatcgaggtgcag
cgcgaatcctatgagcagttcctgcgctcggatccctcgatcggctatgtttcgggcctc
gaaaagacgctgcgcagcgttttcccgatccgcgacttcgccggcaccgccgagctcgac
ttcgtccactacgaactcgaagagccgaagtatgacgtcgaggaatgccgtcagcgcggc
atcacctatgcggcgccgatgaaggtcacgctgcgcctgatcgtcttcgaggtcgacagc
gaaaccgacacccgttcggtgctcgatatcaaggagcaggacgtctacatgggcgacatg
ccgctcatgaccgagaacggcaccttcttcgtcaacggcaccgagcgcgtcatcgtgtcg
cagatgcaccgttcgccgggtgtgctcttcgaccacgatcgcggcaagacccactcgtcg
ggcaagttcctgttcgccgcgcgcgtgatcccctatcgcggttcgtggctcgacttcgaa
ttcgacgccaaggacatcgtcaacgtccgcatcgaccgcaagcgcaagctgccggttacc
agccttctctatgcgctgggcatgtcgggcgaggaaatcctcaaccatttctatgaccgc
ctcgtcttcgagcgcgccgaaaacggctggaaggttcccttcgtcgtcgaaaactggcgc
ggttcgaagcccgctttcgacgtcgtggacgccaagaccggcgaagtcgtcttcgccgcc
ggccacaagatcagcccgcgccttgccaacaaggcggcgaaggacggtctcgacacgctg
ctgatcccgaccgaggaaatcttcggccgctactcggcctatgacctgatcaacgaagcg
accggcgagatctatatcgaagccggcgacgaagtgtcggccgacaatctcgagaagctc
gacgccgcgggcatcgacaagctcgtgctgctcgacatcgaccacaacaacaccggtccg
tggatccgcaacacgctgaaggccgacaaggccgaggaccgcgaccaggcgctgagcgac
atctaccgcgtcatgcgccccggcgaaccgccgacgcgcgaaaccgccgaagctttgttc
ggcggcctgttcttcgacgcggagcgttacgacctgtcggccgtgggccgcgtgaaattg
aacatgcgcctcggcctcgacgccgaggatacggtgacgacgctgcgcagcgaggacatc
ctcgccgtggtcaaggagctggtgaacctgaaggacggcaagggcgagatcgacgacatc
gacaatctcggcaaccgccgcgtgcgttcggtcggcgagctgctcgaaaaccagtatcgc
gtcggcctgctgcgcatggaacgcgcggtgaaggagcgcatgagctcggtcgacgtgtcg
accgtgatgccgaacgacctgatcaactccaagccgatctcggctgccatcaaggagttc
ttcggttcgagccagctgtcgcagttcatggaccagaccaacccgctgtccgaagtcacc
cacaagcgccgcgtctcggcgctcgggccgggcggtctgacccgcgaacgcgcgggcttc
gaggtccgcgacgttcacccgacccactatggccgcatctgcccgatcgaaacgcccgaa
ggcccgaacatcggtctgatcaacagcctcgcgacctttgcgcgcgtcaacaaatatggc
ttcatcgaaacgccataccgccgcatcgtcgatggcaaggtcaccaatgaagtcgtctat
ctctcggcgatggaagagtcgaagcacacggttgcgcaggcgaacgccgacctcaaccct
gatggcagcttcatcgacgagctgatctcggcgcgcgaagccggcgaattcctgatggcc
ccgcgcgaccagatcaccttgatggacgtgtcgccgaagcagctcgtttcggtcgcggcc
tcgctgatcccgttcctcgaaaacgatgacgccaaccgcgcgctcatgggttcgaacatg
cagcgtcaggctgtgccgctgctccgtgcagaggctccggtcgtcggcaccggcatggaa
gagaccgtcgcgcgcgattcgggcgctgcgatcgccgcgcgccgcggcggcgtgatcgac
caggtcgatgcgacgcgtatcgtcatccgcgcgaccgacatggtcgaacccggcaagtcg
ggcgtcgacatctatcgtctgcagaagttccagcggtcgaaccagaacacctgcatcaac
cagcgtccgctggtgaaggtgggcgacgtggtcaagagcggcgacatcatcgccgacggt
ccgtcgaccgagcttggcgaactggcgctcggcaagaatgtgctcgtcgcgttcatgccg
tggaacggctacaactatgaggactcgatcctcatttccgaacgcatcgtgaaggatgac
gtcttcacctcgatccacatcgaggaattcgaagtcaccgcgcgcgacacgcgccttggc
cccgaagacatcacgcgcgacattccgaacgtcggcgaggaagccctgcgcaacctcgac
gaggcgggcatcgtctatatcggcgccgaagtcggccccggcgacattctcgccggcaag
atcacccccaagggtgaatcgccgatgacgccggaagaaaagctgctgcgcgcgatcttc
ggcgaaaaggcgagcgacgtgcgcgacacctcgcttcgcctgccgccgggcgtgtcgggc
acggtcgtcgaagtccgcgtcttcaaccgtcacggcatcgacaaggacgaacgtgcgatc
gcgatcgaacgcgaggaaatcgagcggctgaagcaggacgccgacgacgagcgcgcgatc
ctcaaccgcgcgaccttctcgagcctcaaggacctgctgatcggtcagacgaccagcgcg
gtgccgaagggcctcaagaagggcgacaccgtcaccgaggagatgctggtcgaactcgac
cgcgccgactggtggaagctcgcggtggtcgaggacaatgcccagacggcattggaagcg
atcaaggcgcagtatgacgacgcgatcaagcggatcaacgcgaaatatgaagatcgcgtc
gagaagctgcagcgcggcgacgaactcgctcccggcgtgctcaagatggtcaaggtcttc
gtcgcggtgaagcgcaagctgcagccgggcgacaagatggccggccgtcacggcaacaag
ggcgtcatcagccgcatcctgccgaacgaggacatgccgttcctcgaagacgggacgcat
gtcgacatcgtgctcaacccgctgggcgtgccgtcgcgcatgaacgtcgggcagatcctc
gaaacccacctcggctgggcttcgcgtgggttgggccggcaggtgacgcaggcgctcgac
gaatggcgcgacgccaatcccgacgcggtcggcgggcagatgcccgaagccgtgcgcgat
gcgctcgagcatgtctatggcgccgaatatctcgaggacatcaagtcgcgcgatgccgac
agcatcgtcgaactggccgacaacctgcgcgttggcgtgccgttcgcgaccccggtgttc
gacggcgccaaggaagccgacgtgtcgaacatgctgaccctcgcggggctgcacgaatcg
ggacagtcggacctgtacgacggccgcaccggcgacaagttcgaccgcaaggtgaccgtg
ggctacatctatatgctgaagctccaccacctcgtcgacgacaagatccacgcgcgctcg
atcggcccctacagcctcgtcacccagcagccgctgggcggcaaggcgcagttcggcggc
cagcgcttcggtgaaatggaagtgtgggctctgcaagcttatggcgcggcgtacacgctg
caggaaatgctgacggtgaagtccgacgacatcaccggccgcaccaaggtttacgaagcg
atcgtcaagggcgacgacaccttcgaggccggcattcccgaaagcttcaacgtgctcgtc
aaggaaatgcgctcgctgggcctcaacgtcgagctttcgtcctatgcggacgaagacgat
gacgaaggtcccgaagcccttcccgaagccgccgaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (19)   

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