KEGG   Sphingopyxis sp. PAMC25046: E5675_10640
Entry
E5675_10640       CDS       T06315                                 
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
sphx  Sphingopyxis sp. PAMC25046
Pathway
sphx02024  Quorum sensing
sphx03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sphx00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    E5675_10640
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    E5675_10640
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sphx03019]
    E5675_10640
   03036 Chromosome and associated proteins [BR:sphx03036]
    E5675_10640
Messenger RNA biogenesis [BR:sphx03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     E5675_10640
Chromosome and associated proteins [BR:sphx03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    E5675_10640
SSDB
Motif
Pfam: Hfq
Other DBs
NCBI-ProteinID: QCB54845
UniProt: A0A4P7RWV2
Position
2276082..2276612
AA seq 176 aa
MHRQEQEANVSDKNQNLQDIFLNALRKSKTPVTMFLVKGVKLQGIITWFDNFSLLLRRDG
QSQLVYKHAISTVMPSHDFDLSLLGDNLRDAPASKGKALQDVFLNAVRRSDESVTMFLVN
GVMLQGDIVAFDLFCMLLERERQVQLVYKHAISTVQPNGPINLTDNGEGDGEADDA
NT seq 531 nt   +upstreamnt  +downstreamnt
ttgcaccgccaagaacaggaggcaaatgtgtccgataaaaaccagaatctccaggatatt
ttcctcaacgccctccgcaagagcaagaccccggtgaccatgttcctggtcaagggcgtc
aagctgcagggcatcatcacctggttcgacaatttctcgctgctgctccgccgcgacggc
cagtcgcagctggtgtacaagcatgcgatctcgacggtgatgccgtcgcacgatttcgac
ctgtcgctgctcggcgacaatctgcgcgatgcgccggcgagtaagggcaaggcgttgcag
gatgtgttcctgaacgccgtccgccgttcggacgaatcggtcacgatgttcctcgtcaac
ggcgtgatgctgcagggcgacatcgtcgccttcgacctcttctgcatgctgctcgagcgc
gagcggcaagtgcagctcgtctacaagcacgcgatttcgaccgttcagccgaacgggccg
atcaacctgaccgacaatggcgagggtgacggcgaagcggacgacgcctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (1)   
   Pfam (1)   
All databases (10)   

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