KEGG   Sphingorhabdus sp. YGSMI21: CHN51_08420
Entry
CHN51_08420       CDS       T05308                                 
Name
(GenBank) DNA-formamidopyrimidine glycosylase
  KO
K10563  formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Organism
sphy  Sphingorhabdus sp. YGSMI21
Pathway
sphy03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:sphy00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    CHN51_08420
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sphy03400]
    CHN51_08420
Enzymes [BR:sphy01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.23  DNA-formamidopyrimidine glycosylase
     CHN51_08420
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     CHN51_08420
DNA repair and recombination proteins [BR:sphy03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     CHN51_08420
SSDB
Motif
Pfam: Fapy_DNA_glyco H2TH zf-FPG_IleRS
Other DBs
NCBI-ProteinID: ATW03554
UniProt: A0A2D3RCV8
Position
1734959..1735771
AA seq 270 aa
MPELPEVETTVAGLRPVLEGQRLTLVEPRRADLRWPIPVDLRQRMTGAMVISLGRRAKYG
LIETDRGDVMIFHLGMSGRWRIDPEEIEKHDHLLLETESGHRLTLNDPRRFGSLDIVRTG
DLDSYKPFVAMGPEPLSEDFTGAYLKAATRDRKAPIKQLLLDQRTVAGLGNIYVCEALHM
AGISPGRKGAAISKPRYERLVAAIKQVLIAAIAAGGSSLRDFVQPDGELGYFAKDWRVYG
REGGACECGATVLRRVDSGRSTFYCSQCQK
NT seq 813 nt   +upstreamnt  +downstreamnt
atgccagaactgcccgaagtagaaacaaccgtggctggattgcgtccggtgctcgagggg
cagcgcctcactctggtggaaccgcgccgcgccgatctgcgctggccgattccggtcgat
ttgcggcagagaatgaccggcgcgatggtcatttcgctcggcaggcgggcaaaatatggt
ttgatcgaaaccgaccggggcgacgtgatgatctttcacctcggcatgtcggggcgctgg
cggattgatccggaagagatcgagaaacatgatcatctgttgctggaaacggaatccggc
caccggctgacgctcaacgatccgcgccgattcggttcgctggacatcgttcgcaccggt
gatctggacagttacaagccttttgtggcgatggggccggaaccgttgagtgaggatttt
accggcgcttatctcaaagccgcgaccagagaccgcaaggccccgatcaagcagctgttg
ctggaccagcgcacggtcgcgggactcggcaatatctatgtttgcgaggcgctgcatatg
gcgggcatatccccgggccgaaagggtgccgcgatatcgaagccacgctacgagcggctc
gttgccgcgataaaacaggttttgatcgcggccatcgcggctggcgggtcgtccctgcgc
gatttcgtgcaaccggacggggaactgggctatttcgccaaggactggcgggtctacggc
agggaaggaggggcctgtgaatgcggtgcgacagtgctgcgccgagtcgatagcgggcgc
tcgaccttttactgctcgcaatgtcagaaataa

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