KEGG   Spirosoma pollinicola: CWM47_27335
Entry
CWM47_27335       CDS       T05236                                 
Name
(GenBank) integration host factor subunit beta
  KO
K03530  DNA-binding protein HU-beta
Organism
spir  Spirosoma pollinicola
Brite
KEGG Orthology (KO) [BR:spir00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:spir03032]
    CWM47_27335
   03036 Chromosome and associated proteins [BR:spir03036]
    CWM47_27335
   03400 DNA repair and recombination proteins [BR:spir03400]
    CWM47_27335
DNA replication proteins [BR:spir03032]
 Prokaryotic type
  DNA Replication Initiation Factors
   Initiation factors (bacterial)
    CWM47_27335
Chromosome and associated proteins [BR:spir03036]
 Prokaryotic type
  Nucleoid associated proteins
   HU (heat unstable protein)
    CWM47_27335
DNA repair and recombination proteins [BR:spir03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Supressor
      CWM47_27335
SSDB
Motif
Pfam: Bac_DNA_binding HU-HIG HU-CCDC81_euk_2 HU-CCDC81_bac_2 ORC2 HU-CCDC81_euk_1
Other DBs
NCBI-ProteinID: AUD05231
UniProt: A0A2K8Z5T6
Position
6519909..6520211
AA seq 100 aa
MTKADVIAEISDKTGIDKAEVTNTLETFFSVVKDSLAEGENIYVRGFGSFINKKRAKKVA
RNISKNTAMVIDEHFIPSFKPAKVFVEQVKTSDKAKVTAE
NT seq 303 nt   +upstreamnt  +downstreamnt
gtgacgaaagcagatgtaattgccgagatctccgataagaccggaattgacaaggcagaa
gtgacaaacacactggaaacattcttttcagtagttaaggactcgctggccgagggagag
aacatttatgtgagagggttcggcagcttcatcaataagaaaagagccaagaaagtagcc
cggaatatctcgaagaataccgctatggtaatcgatgagcactttattccgagctttaaa
cccgccaaagtttttgttgagcaggtaaaaaccagcgacaaagccaaagtaacggcggag
taa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (15)   

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