KEGG   Sphingomonas sp. KC8: KC8_01275
Entry
KC8_01275         CDS       T04987                                 
Name
(GenBank) helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
spkc  Sphingomonas sp. KC8
Pathway
spkc03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:spkc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    KC8_01275
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:spkc03019]
    KC8_01275
   03009 Ribosome biogenesis [BR:spkc03009]
    KC8_01275
Enzymes [BR:spkc01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     KC8_01275
Messenger RNA biogenesis [BR:spkc03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     KC8_01275
Ribosome biogenesis [BR:spkc03009]
 Prokaryotic type
  rRNA helicases
   KC8_01275
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII AAA_22 CMS1
Other DBs
NCBI-ProteinID: ARS25928
UniProt: A0A1X9YAS6
Position
252795..254531
AA seq 578 aa
MPFSRLTPLLAEALSERGYAAPTPVQAAVLEEGADNRDLIVSAQTGSGKTVAFGLAIAKQ
LLEEDGRVGRVQAPLALAIAPTRELALQVSRELMWLYGKAGARIVSCVGGMDPSRERRNL
SHGAHIVVGTPGRLRDHLERGALDLSGLKVAVLDEADEMLDMGFREDLEEILDATPDNRR
TLLFSATMPKPIVALAKRYQRDALRISTVGEDRGHGDISYQAVTVAPSDIEGAVVNLLRF
HEPDTAMLFCATRDAVRHLHASLVERGFDAVALSGEHSQNERNHALQALRDRRARVCVAT
DVAARGIDLPTLSLVVHVELPRDAEALQHRSGRTGRAGKKGTAVLIVPYQRRRRVEGMLR
GARIQAEWVSPPTAEAIRNADRERLLATLSAPVEIEDEDRALAVRLMAELSAEDIAAMLV
RSHRARLPAAEDLIEQGASPAPRERLEGPRPGFEDTIWFRMDVGRRHNADPRWLLPLLCR
RGHITKQDIGAIRIAADETMFEIPRHAAARFVAAVKRTAGGDPNGEDGIRIEPVQGAPRE
QQRQNRRAGPGGPGGAAAPRHHAKPFRGPPRGGPSRGR
NT seq 1737 nt   +upstreamnt  +downstreamnt
atgcctttcagtagattgaccccgcttcttgccgaagcactatccgaacgcggctatgcc
gcccctacacccgtccaggccgccgtcctggaagagggcgcggataaccgcgaccttatc
gtttccgcccagaccggttcgggcaagaccgtggccttcggcctcgcgatcgccaagcag
ttgctggaagaagatggccgcgttggccgtgtccaggcgccgctggcgcttgccatcgcg
ccgacccgcgaactggccctgcaggtcagccgcgaactgatgtggctgtacggcaaggcc
ggcgcgcgcatcgtttcgtgcgttggcgggatggacccgtcgcgcgagcggcgcaacctg
tcgcacggcgcgcacatcgtcgtcggcacgccgggccgcctgcgcgatcatctcgaacgc
ggcgcgctcgacctgagcggcctgaaggtcgcggtgctcgacgaagccgacgagatgctc
gacatgggtttccgcgaggatctggaagaaattctggatgcgacgccggataatcgccgc
acgctgctgttttcggcgacgatgcccaagccgatcgtggcgctagccaagcggtatcaa
cgcgatgcgctgcgtatctcgaccgtgggtgaagatcgcggccatggcgatatttcctat
caggcggtgacggtggccccgtcagatatcgaaggcgcggtggtgaacctgctgcgtttc
cacgaacccgacaccgcgatgctgttctgcgcgacgcgcgatgcggtgcgccacctgcac
gccagccttgtcgagcgcgggttcgacgcggtggcgctgtcgggcgagcatagccagaat
gaacgcaaccatgcgttgcaggcgctgcgcgatcgccgcgcccgcgtgtgcgtggcaacc
gacgtggccgcgcgcgggatcgatctgccgacgctgtcgctggtcgtccatgtcgaactg
ccgcgcgatgccgaagcgttgcagcaccgttcgggccgcaccggccgcgcgggcaagaag
ggcaccgccgtcctgatcgtgccctatcagcgccgccgccgggttgaaggcatgttgcgc
ggcgcgcggatccaggccgaatgggtgtcgccgcccactgccgaggcgattcgcaacgcc
gatcgcgaacggctgcttgcgacattgtccgcccccgtcgagatcgaggatgaagatcgc
gcgctggcggtgcggctgatggccgaactgagcgctgaggatatcgccgcgatgctggtg
cgcagccaccgcgcgcgtttgccggccgccgaagacctgatcgagcagggcgcatcgccc
gccccgcgcgaacggctggaagggccgcgtccgggctttgaagacacgatctggttccgc
atggatgtcggccggcggcacaatgccgatccgcgctggctgctgcctttgctgtgccgt
cgcgggcacatcaccaagcaggatatcggcgcgatccgcatcgccgcggacgagacgatg
ttcgaaatcccgcgccacgccgccgctcgcttcgttgccgcggtcaagcgcaccgccggt
ggtgatcccaatggcgaggatggcatccgtatcgagccggtgcagggtgcaccacgcgaa
cagcagcgccagaaccggcgtgctggcccgggtggtcccggtggcgccgcggcgccacgg
catcatgccaagccgtttcgcggaccgccgcgtggtgggccgtcgcgcggtcgctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

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