KEGG   Shewanella pealeana: Spea_0102
Entry
Spea_0102         CDS       T00606                                 
Name
(GenBank) DNA polymerase I
  KO
K02335  DNA polymerase I [EC:2.7.7.7]
Organism
spl  Shewanella pealeana
Pathway
spl03030  DNA replication
spl03410  Base excision repair
spl03420  Nucleotide excision repair
spl03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:spl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Spea_0102
   03410 Base excision repair
    Spea_0102
   03420 Nucleotide excision repair
    Spea_0102
   03440 Homologous recombination
    Spea_0102
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:spl03032]
    Spea_0102
   03400 DNA repair and recombination proteins [BR:spl03400]
    Spea_0102
Enzymes [BR:spl01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     Spea_0102
DNA replication proteins [BR:spl03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     Spea_0102
DNA repair and recombination proteins [BR:spl03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA polymerase I
     Spea_0102
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Spea_0102
SSDB
Motif
Pfam: DNA_pol_A 5_3_exonuc_N DNA_pol_A_exo1 5_3_exonuc HHH_5
Other DBs
NCBI-ProteinID: ABV85431
UniProt: A8GYP4
Position
complement(113799..116555)
AA seq 918 aa
MPKIADNPLILVDGSSYLYRAYYAPPHLTNSKGEATGAVYGVINMLRSLLNQYKPSQMAV
VFDAKGKTFRNDMYSEYKAQRPPMPDDLRTQIEPLHRIIKALGLPLVSISGVEADDVIGT
IATQASKEGRAVLISTGDKDMAQLVDENVTLINTMTNTIMGPAEVTEKFGVGPELIIDLL
ALQGDKADNIPGLPGVGEKTALAMLTGVGGVDKILAAPEKMPELGFRGSKTMPAKIIEHA
DMLKLSYELATIKLDVELEQDWHQLSITPADKDELIKCYGEMEFKRWLAEVLDNKGDTTA
ATESEDDAPAAKLDIEVEYDTILSLEQLDCWIEKLTAAELIAIDTETTSLNYMEAKLVGI
SFAVEAGKAAYLPLEHDYVDAPEQLDRALVFEKLQPLLEDENLKKVGQNLKYDISIFANI
GITLRGVQFDTMLESYVFNSVASKHNMDDLALKYLGHKNISFEEIAGKGVKQLTFNQIPL
ETAAPYAAEDADITLRLHQHLWSRLEKLPELASVFTDIELPLVNTLSNIERQGVLIDSML
LGQQSEELARKIDELEHKAHEIAGEPFNLSSPKQLQALFFEKLGYPVIKKTPKGAPSTAE
EVLVELALDYPLPKIILEHRSLAKLKSTYTDKLPLMVNAKTGRVHTSYHQANAATGRLSS
SEPNLQNIPIRTEEGRRIRHAFIAPEGKKILAADYSQIELRIMAHLSQDTGLLTAFAEGK
DIHKATAAEVFDVDFSEVTSDQRRRAKAVNFGLIYGMSAFGLAKQLDIPRAEAQSYIDTY
FKRYPGVLKYMEETRAIAADLGYVSTLFGRRLYLPAIKDRNAMRRQAAERAAINAPMQGT
AADIIKKAMINIAQWIETETQGEIIMIMQVHDELVFEVDEAKADSLQAKVCELMAAAAKL
DVELLAEAGIGDNWEQAH
NT seq 2757 nt   +upstreamnt  +downstreamnt
atgcctaaaattgccgacaaccctttaattcttgtggatggttcttcatacctctaccgc
gcctactatgcaccacctcacctaacgaattctaagggagaagcaactggtgccgtatac
ggcgttatcaacatgcttcgtagcctactaaaccaatataagccatcacaaatggctgtg
gtttttgacgcaaaaggcaaaacattccgtaacgacatgtattcggaatataaggcgcag
cgtccacctatgcctgatgatctacgcacgcaaatcgagccgttgcatagaatcattaaa
gctctgggtttacctcttgtatccatttctggcgttgaagccgacgatgttatcggcacc
attgcgacccaagccagtaaagaaggccgcgcggtattgatcagcaccggcgataaagat
atggcgcaattagtggatgaaaacgtcacgctaattaataccatgactaacaccatcatg
gggccggccgaggtcaccgagaaatttggtgttggaccagagttaattatcgacttacta
gccttgcaaggtgataaggccgataacattccaggcctgcccggtgttggcgagaaaacg
gcactcgctatgctaacaggtgtcggtggtgtcgataagatccttgctgcgccagagaag
atgccagagctaggctttcgcgggtcgaaaactatgccagctaagattattgagcatgcc
gatatgctcaaattgagctatgaacttgcaaccatcaagttagatgtcgaacttgagcaa
gattggcatcaactgtcgataacacctgcagacaaagacgaactcattaagtgttacggt
gagatggagtttaagcgctggctagcagaagtgctcgataacaagggcgataccacagca
gccacagagtctgaagatgatgcccctgcagcaaagctagatatcgaagttgagtacgat
accattctgagcctagagcaactcgattgctggattgaaaaattaacagctgcagagctt
atcgccatcgacaccgaaaccactagcctcaattatatggaggctaagctagtcggcatc
tctttcgcggttgaagcaggtaaggcggcttatctacctctagagcatgactacgtcgat
gctcccgagcagttagatcgcgcccttgtatttgaaaaactacaaccactgcttgaagat
gaaaaccttaaaaaagttggtcaaaatctaaagtacgacatcagcatttttgccaacatt
ggcatcactttacgtggcgtacagttcgatacaatgcttgagtcctatgtgttcaactct
gtggcttcaaagcacaacatggatgatttggcacttaaataccttggccataagaacatc
agtttcgaagagattgctggtaaaggcgttaagcagctgacctttaatcaaattcctctt
gaaactgccgcgccttatgccgcagaagatgccgatattactctgcgtctgcatcagcac
ctttggtcaagactagaaaagctgcctgagctggccagtgtattcactgatattgagttg
ccactggttaataccttatcgaatatcgaacgccaaggcgtgttaatcgacagtatgttg
ctcggtcagcagagtgaagagcttgcacgcaagattgatgagttagagcataaagcccat
gaaattgccggtgagccattcaatttaagctcgcctaaacagttacaggcgctattcttt
gaaaaactgggttatcccgtgatcaagaagacccctaaaggtgcaccttcaacagccgaa
gaagtgctggttgaattagcactagattacccgttgccgaagattattttagagcatcgc
agtctagctaaactaaagagcacttacacagataaactaccgttaatggttaatgccaaa
acaggccgtgtacatactagctaccatcaagccaatgcagcaacgggacgcttatcatcg
agcgagcctaatctgcagaatatcccaatccgtaccgaagagggtcgccgtattcgtcac
gcgtttatcgcaccagagggtaaaaaaatcctcgcagccgattactcacagatcgaattg
agaattatggcccatctttcacaagatacaggtctacttaccgcctttgcggaaggtaaa
gacattcataaagcgaccgcagcagaagtattcgatgttgattttagtgaagtgacctca
gatcagcgtcgccgcgctaaagcggttaacttcggtttgatctacggtatgtctgcgttt
ggtcttgccaagcagcttgatatcccaagagccgaagcacaaagctatatcgacacttac
tttaagcgctacccgggcgtactgaagtatatggaagagacccgcgccatcgcagccgat
ctaggttacgtatcgacgctattcggtcgtcgcctctatctgccagccattaaagataga
aacgccatgcgtagacaagctgccgaacgcgcagcgatcaacgcgcctatgcaaggtacc
gctgccgatatcattaagaaagccatgattaatatcgcacagtggattgaaaccgaaacc
caaggcgaaatcattatgatcatgcaggttcacgatgaattggtgtttgaggtcgatgaa
gcaaaggccgatagcttgcaggctaaggtgtgtgaattgatggccgccgcagccaagcta
gatgttgagctgttggcagaagctggcataggtgacaactgggaacaagctcactaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (19)   

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