KEGG   Shewanella pealeana: Spea_0399
Entry
Spea_0399         CDS       T00606                                 
Name
(GenBank) DEAD/DEAH box helicase domain protein
  KO
K03732  ATP-dependent RNA helicase RhlB [EC:5.6.2.7]
Organism
spl  Shewanella pealeana
Pathway
spl03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:spl00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Spea_0399
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:spl03019]
    Spea_0399
Enzymes [BR:spl01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     Spea_0399
Messenger RNA biogenesis [BR:spl03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     Spea_0399
SSDB
Motif
Pfam: DEAD Helicase_C CMS1 ResIII
Other DBs
NCBI-ProteinID: ABV85727
UniProt: A8GZJ0
Position
481557..482867
AA seq 436 aa
MSETHLSTQKFADFPLHKEVHQALNEAGFEFCTPIQALSLPILLEKKDIAGQAQTGTGKT
LAFLVATFNHLLSTPIPAERQLNQPRAIIMAPTRELAIQIAKDANLLAKHTGLKVGIVYG
GEGYEVQRKVLDKGVDILIGTTGRIIDYVRQGVINVSCIQAVVLDEADRMFDLGFIKDIR
FLFRRMPDAKSRLNMLFSATLSMKVQELAYDHMNEPEKVEIAPNEKTSKNIKEEIFYPSM
EEKMPLLLSLLEEDWPEKAIVFSNTKHSCEKVWSWLEGDGHRAGLLTGDVPQKKRLRILE
QFTKGDIDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGQKGVSVSFA
CEEYALNLPAIESYIQHSIPVTSYDSDALLDDIPPPVRIHRKPSTHTRNTRDRSSGRPQG
GQRNGPRRHDKTRRHS
NT seq 1311 nt   +upstreamnt  +downstreamnt
atgagcgaaacacatttatctacacaaaagtttgctgacttccctttacataaagaagta
catcaagcacttaacgaagctggattcgagttttgcaccccaatccaagctttgtcgtta
ccgattttattagaaaaaaaagatatagcgggtcaggcacaaacaggtacgggtaaaact
ctggcctttctagtcgccacttttaaccaccttctgtctacgccaatcccagccgaacgc
caactaaatcaacctcgcgcaattattatggcgccgactcgagagttggcgattcaaatt
gctaaagatgcgaatctactggctaagcatactggtcttaaagtcggtatcgtttacggc
ggtgaaggctacgaagttcaacgcaaagtattagataaaggcgttgatatattgattggt
accacaggccgcattattgattatgtgcgtcaaggtgtgatcaatgttagttgtattcaa
gcagtggtacttgatgaagcggatcgcatgttcgatttaggctttattaaggacatccgt
ttcttgtttagacgtatgcctgatgctaaatcacgcttgaatatgctgttctctgcaacg
ctttcaatgaaagtgcaagaacttgcttatgaccacatgaatgagcctgaaaaagttgag
atcgcgccaaacgagaaaacatcaaagaatattaaagaggaaatcttctatccatcgatg
gaggagaagatgcctttgctattgtctttgcttgaagaagactggccagaaaaagccatc
gtgttttctaataccaaacacagctgtgagaaagtatggtcatggcttgaaggtgatggc
catcgcgcaggcctgctaacgggtgatgtgccgcagaagaaacgtttacgtattcttgag
caatttactaaaggcgacatcgatatcttagttgcgaccgacgttgcggcgcgtggctta
catatctctgatgtgtcacatgtttataactatgacctgccagatgattgtgaggactac
gtgcaccgtatcggtcgtactggtcgtgcgggtcaaaaaggggtatcagtcagctttgct
tgtgaagagtacgcgttgaacctgcctgctatcgagtcgtatattcagcactcaattcca
gtgacatcttatgacagcgatgcactacttgatgatattccaccaccggtgagaattcat
cgtaagcctagtacccatacgcgaaatactcgtgatcgtagttctggtcgtccacagggt
gggcagcgcaatggacctcgacgtcatgacaaaacgcgtagacattcgtag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (4)   
   Pfam (4)   
All databases (14)   

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