KEGG   Shewanella pealeana: Spea_2870
Entry
Spea_2870         CDS       T00606                                 
Name
(GenBank) DNA polymerase III, alpha subunit
  KO
K02337  DNA polymerase III subunit alpha [EC:2.7.7.7]
Organism
spl  Shewanella pealeana
Pathway
spl03030  DNA replication
spl03430  Mismatch repair
spl03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:spl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Spea_2870
   03430 Mismatch repair
    Spea_2870
   03440 Homologous recombination
    Spea_2870
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:spl03032]
    Spea_2870
   03400 DNA repair and recombination proteins [BR:spl03400]
    Spea_2870
Enzymes [BR:spl01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     Spea_2870
DNA replication proteins [BR:spl03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     Spea_2870
DNA repair and recombination proteins [BR:spl03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     Spea_2870
SSDB
Motif
Pfam: DNA_pol3_alpha DNA_pol3_finger PHP HHH_6 DNA_pol_IIIA_C tRNA_anti-codon tRNA_anti_2
Other DBs
NCBI-ProteinID: ABV88188
UniProt: A8H6K1
Position
complement(3505566..3509099)
AA seq 1177 aa
MFYSVRLTSSLQLSNRKILHIMSEPRFVHLRVHSDFSMSDGLSKVKPIIAKVAELGMPAV
ALTDQTNMCGLVKFYEACHGNGVKPIIGTDFWVKVPGFDEFCSITALAMDNTGYSNLTLL
ISDAYLRGNINDKAVIDHEWLAKYSEGLILLSGAKDGDVGRALLKENQNQVDSLIEFYKT
HFPDRYYLELLRTGRPDEERYLHMAIALAEQKDLPVVATNQVVFNKPEQFDAHEIRVAIY
DGFTLADPRRPKKYSDQQYFKSSDEMCELFEDIPEAIQNTVEIAKRCNATVRLHEYFLPN
FPTGDLTIEDFLVDVSEKGLEERLEFLFPDPEVRAEKRPEYDERLDIELKVINQMGFPGY
FLIVMEFIQWGKDNDIPIGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMP
DFDVDFCMDRRDEVIDHVADLYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRIS
KMIPAEPGMTLAKAFEVEPGLQESYDGDEDVKDLIDMCRILEGVTRNAGKHAGGVVIAPT
KITDFSPIYCDTEGLNPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALQMVNSVKDKNG
EERVRIESISLTDPKCFKLLQRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRP
GPLQSGMVDNFIERKHGREEVSYPDAEYQHESLKELLSPTYGIILYQEQVMQIAQVLAGY
TLGGADMLRRAMGKKKPEEMAKQRGTFEAGAIENGVDGPLSMKIFDLVEKFAGYGFNKSH
SAAYALVSYQTLWLKTHYPAQFMAAVMSADMDNTDKIVTLVDECERMGMPLLPPDVNKGL
FRFTVDDDLNIVYGIGAVKGVGEGPVDSILKARENGPFIDLFDFCARIDLKKLNRRVIEK
LICAGALDNLGPHRAAMMATLPEAIRAADQHAKAEAIGQHDMFGLLNSEPEDSKQQFVEC
TPWPDKVWLEGERDTLGLYLTGHPINQYLKELKHYTSGRLKDVHPTERGKTMKAAGLVVA
TRVMMTKRGSKMGLVTLDDKSARLEVMLFTEAFEKFNHLLEKDRILIIEGEVSFDDFSGG
NRMTARNIIDMGEARSHFANAVEVELQSDKVNALWLNEFKAAVEPWKAGAVPVLINYAQP
QSQAQFTLGDEWRVNPTDELMLALESLTGSGKVKIVF
NT seq 3534 nt   +upstreamnt  +downstreamnt
atgttttactctgtaagattgactagcagtcttcaactatcaaatagaaagatactccat
attatgtctgaaccacgttttgttcacttgcgcgtccacagcgacttttcaatgtctgat
ggactgtctaaagttaagcccattattgctaaagtggctgaacttgggatgccggcagtt
gcgttaactgatcaaacaaatatgtgtggtttggttaagttttacgaggcttgtcatggt
aacggtgttaagccaatcatcggcaccgacttttgggtcaaagtcccggggttcgatgaa
ttttgctctattacagctttagcgatggataacacaggttattcaaatctgaccttgttg
atcagtgacgcttatcttcgcggtaacatcaacgataaagcggtgatcgatcacgagtgg
ctagccaagtatagcgaaggtctcattttgctttcgggcgctaaagatggcgatgtcggc
cgtgcgttattgaaagagaaccaaaaccaggtggactcactaattgagttctataagact
catttccccgatagatattatttagagttgttgcgtaccggtcgtcctgacgaagagcgc
tatttacacatggctatcgcacttgctgagcaaaaagacttgccagtggtcgctaccaat
caggtggtatttaacaagccagagcagtttgacgcccacgaaattcgagtggccatctac
gatggttttacccttgccgacccccgcagaccgaagaaatacagcgaccagcagtatttt
aaaagcagcgatgagatgtgtgagctgtttgaagatattcctgaagcgattcaaaatacg
gtcgaaattgctaagcgttgtaacgctacagtaagactgcacgagtactttctgcctaac
ttccctacgggcgacttgaccattgaagactttttagtagatgtatcagaaaagggctta
gaggagcgactagagtttctttttcctgaccctgaagtcagagcggagaagcgccctgaa
tacgatgagcgtctcgatattgagcttaaagtaatcaaccagatgggtttcccgggttac
ttccttatcgtaatggagtttattcaatggggcaaagataacgatatcccaattggccca
ggtcgtggttcaggcgccggttccttggtggcttacgcccttaaaattaccgatttagac
ccactcgaatacgatttactgttcgagcgatttctaaaccctgaacgtgtatcaatgccc
gacttcgacgtcgatttttgtatggatagacgtgacgaggtaatcgatcacgtagcagac
ctttatggtcgtgacgcggtatctcagatcattacttttggtaccatggctgctaaagcg
gtaattcgagacgtaggccgtgtgcttggccacccctatggtttcgtcgatcgtatctct
aaaatgatcccggctgagcctggtatgactttggctaaagcattcgaggtcgagccaggc
ttacaagaatcttatgatggcgatgaagatgttaaagatctcatcgacatgtgtcgtatt
cttgaaggtgtaacccgtaacgcgggtaagcacgccggtggtgtggtcatcgcgccgacg
aaaatcaccgacttttctcctatttactgcgatacagaaggcttaaatccggtcactcag
ttcgacaagaacgatgttgaaacagctggtcttgttaagttcgactttttgggcctaagg
acgctgaccattatcgactgggcactacagatggtgaacagcgtcaaagacaagaatggt
gaagagcgggttcgtatcgagtcgatttcactgaccgatcctaagtgttttaagttatta
cagcgctatgaaaccactgcggtattccagctggaatcccgtggtatgaaagacttgatt
aagcgtcttcagccagattgtttcgaagatatgatcgcactggttgctctgtttagaccg
ggccctctgcagtctggcatggttgataactttatcgagcgtaagcacggtcgagaagag
gtgtcatatcctgatgctgaatatcagcatgagtcgctaaaagagctgttatcacctact
tacggcattattctgtatcaagaacaggtaatgcagattgcgcaggtgctcgccggttat
accttgggtggcgccgacatgcttcgtcgtgccatgggtaagaaaaaacctgaagagatg
gccaagcagcgtggtacgtttgaagcgggtgcaatagaaaacggtgtagatggacccctg
tcgatgaaaatcttcgacttggtggaaaagttcgcgggttacggttttaacaaatcacac
tccgccgcttatgccttggtttcttatcaaactctgtggctaaagacgcattatccggcg
cagtttatggcggcggtaatgtcggcggatatggataacaccgacaagatcgtgacctta
gttgatgagtgtgagcgcatgggaatgccattgctaccacccgatgtaaacaagggcttg
tttagatttaccgtcgatgatgacttaaacattgtttatggcattggcgcagttaaaggc
gtgggtgaaggcccagttgattctattcttaaagcacgtgagaacggaccttttatcgac
ttgtttgatttctgtgctcgtatcgacttaaaaaaacttaaccgccgcgtgattgaaaag
ctaatctgcgctggtgcactcgataacttaggtccgcatcgtgcggcaatgatggcaacc
ttgccagaggcgattcgcgcagcggatcaacatgccaaagccgaagctatcggccagcac
gatatgtttggtttgcttaatagcgagcccgaagacagtaagcagcaatttgttgagtgt
acgccttggcctgacaaagtctggttagaaggtgagcgagataccttaggtctgtatctg
acaggtcacccgattaatcagtatttgaaagagctaaaacactatacatcaggtcgcttg
aaagatgtccacccaacggagcgcggtaagacaatgaaggccgccggtcttgtggttgca
acccgtgtgatgatgaccaagcgtggctctaagatgggacttgttacgcttgacgataag
agcgcacgtttagaggtgatgctatttaccgaggctttcgagaagtttaatcatctgctc
gagaaagaccgtattttgattatcgaaggagaggtgagttttgatgatttctccggtggt
aaccggatgacggcgcgtaatatcatcgatatgggcgaggcaagaagtcactttgctaat
gcggtagaggtggagctgcaatcagataaggttaatgccctgtggttgaatgaattcaag
gctgcagtagagccatggaaagcaggagctgtgcctgtgttgataaactatgctcagcca
caatcacaagcgcaatttaccctaggtgatgagtggcgcgtaaacccgaccgatgagctt
atgttggcgctagagtcgttaacaggttcaggcaaagttaagatcgttttttaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (20)   

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