KEGG   Sphingomonas sp. LK11: AV944_06475
Entry
AV944_06475       CDS       T04954                                 
Name
(GenBank) formamidopyrimidine-DNA glycosylase
  KO
K10563  formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Organism
splk  Sphingomonas sp. LK11
Pathway
splk03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:splk00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    AV944_06475
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:splk03400]
    AV944_06475
Enzymes [BR:splk01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.23  DNA-formamidopyrimidine glycosylase
     AV944_06475
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     AV944_06475
DNA repair and recombination proteins [BR:splk03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     AV944_06475
SSDB
Motif
Pfam: Fapy_DNA_glyco H2TH zf-FPG_IleRS
Other DBs
NCBI-ProteinID: APX65550
Position
1340616..1341431
AA seq 271 aa
MPELPEVETTVRGLTPVLADARLTLVEPRRPDLRHPFPADLRQRMTGATVTSLGRRAKYG
LIDTDRGDTMVFHLGMSGRWRIDPGEPQTHDHLLLETAAGRRLALNDPRRFGFVDLWSTA
DLASYPPFLAMGPEPLGPDFTAAYLAEALEGRAAPVKAMLLDQRIVAGLGNIYVCEALHM
ARITPGRAGGQISKARLARLVESIRAVLEAAILAGGSSLRDYVRPDGELGYFSKEWRVYG
REGEPCECGTIVRRRTDSGRSTFWCATCQRG
NT seq 816 nt   +upstreamnt  +downstreamnt
atgcccgaacttcccgaggtcgaaaccacggtccgcggcctgaccccggtgctggcggac
gcgcggctgaccctggtcgagccgcgccgccccgacctgcgccatccctttccggccgat
ttgcgtcagcggatgacgggggcgaccgtcacgtcgctcggtcgtcgtgcgaaatacggg
ctgatcgataccgatcgcggcgataccatggtcttccacctcggcatgtcggggcgctgg
cggatcgatcccggcgagccgcagacgcatgaccatctgctcttggagacggcagcgggg
cggcggctggcgctgaacgatccccggcgattcggtttcgtcgatctgtggtcgaccgcc
gacctggcgagctacccgccgttcctcgccatggggccggagccgctggggccggacttc
accgccgcctatctggccgaggcgctggaagggcgggcggcgccggtcaaggcaatgctg
ctcgaccagcggatcgtggcgggccttggcaatatctatgtctgcgaggcgctgcacatg
gcgagaatcacgccgggccgggcgggagggcagatatcgaaagcgcgactcgcgcggctg
gtcgagtcgatccgcgccgtactggaggccgcgatcctggcgggcggttcgtcgcttcgc
gattatgtgcggccggacggcgaactgggctatttctccaaggagtggcgcgtctatggt
cgcgagggcgagccgtgcgaatgcggcaccattgtgcggcggcgaaccgattcggggcgc
tcgactttctggtgtgcgacctgccagcgtggttga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (3)   
   Pfam (3)   
All databases (13)   

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