KEGG   Sphingomonas sp. LK11: AV944_14150
Entry
AV944_14150       CDS       T04954                                 
Name
(GenBank) DEAD/DEAH box helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
splk  Sphingomonas sp. LK11
Pathway
splk03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:splk00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AV944_14150
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:splk03019]
    AV944_14150
   03009 Ribosome biogenesis [BR:splk03009]
    AV944_14150
Enzymes [BR:splk01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     AV944_14150
Messenger RNA biogenesis [BR:splk03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     AV944_14150
Ribosome biogenesis [BR:splk03009]
 Prokaryotic type
  rRNA helicases
   AV944_14150
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII CMS1 AAA_22
Other DBs
NCBI-ProteinID: APX66773
Position
complement(3085403..3087145)
AA seq 580 aa
MPFSALPPVLSAALSARGYTAPTPVQAAVIEDDAQGRDLIVSAQTGSGKTVAFGLAMASE
LLNGGDHLPQPGAPMALVIAPTRELALQVSRELEWLYAGARARIATCVGGMDASRERRAL
SHGTHIVVGTPGRLRDHLERGALDLSSLKFVVLDEADEMLDMGFREDLEQILDGTPSERR
TLLFSATMPRPIVQLAKRYQTNAKRIETISEDKGHADIAYQAVTVAPADIEAAVVNLLRL
HEAEVAILFCATRDNVRHLHSSLVERGFSAVALSGEHSQNERNHALQALRDGRARVCVAT
DVAARGIDLPGLTLVIHVEIPRDAEALQHRSGRTGRAGRKGTAILIVPYPRRRRVEGMLR
GARIDAEWRRAPTLEEIRAQDRERLLAALLAPVEVDEGDRELATRLLAEKSPEDIAAALV
RAHRAALPQAEELVEGDAPAPRERREGFDDTAWFRMSVGRSQNADPRWLLPLICRRGHIT
RNEIGAIRIQPNETLFEIPSALASRFIAALKRTEADHAEDDIAIEQADGPPAGGSGHGGA
RRGGPGGNRPMGGRPAGGPGGPRRYSPRPTQGGPRGPRRG
NT seq 1743 nt   +upstreamnt  +downstreamnt
atgcctttttctgccttgccgccggtattgtcggctgccctttccgcgcgtggctatacc
gcgccgacccccgttcaggccgccgtcatcgaggatgacgcccagggccgcgacctgatc
gtgtccgcccagaccggttcgggcaagaccgtcgccttcggcctcgccatggcgagcgag
ttgctgaacggcggcgatcacctgccccagccgggcgcgccgatggcgctggtcatcgcg
ccgacgcgcgagctggcgctgcaggtcagccgcgagctggaatggctttatgccggagcg
cgtgcgcgcattgcgacttgcgtcggcggcatggacgcctcgcgcgaacgtcgcgcgctc
agccatggcacccacatcgtcgtcggcacgccgggccgcctgcgtgaccatctggagcgc
ggcgcgctcgacctgtcgtcgctgaagttcgtcgtcctcgacgaggccgacgagatgctc
gacatgggcttccgcgaggacctggagcagattctcgacggcacgccgtccgagcgccgc
acgctcctcttctcggcgaccatgccgcgcccgatcgtgcagctcgccaagcgttaccag
accaatgccaagcggatcgagacgatcagcgaggacaagggccatgccgacatcgcctat
caggcggtgaccgtggcgcctgccgatatcgaggcggcggtggtcaacctgctgcgtctg
cacgaggccgaggtcgcgatcctgttctgcgccacgcgcgacaatgtccgccatctccat
tccagcctggtcgagcgcggcttctcggcggtcgcgctgtcgggcgagcattcgcagaac
gagcgcaaccatgcgctccaggcgctgcgtgacggccgcgcgcgcgtctgcgtcgcgacc
gacgtggcggcacgcggcatcgaccttccgggcctgacgctcgtcatccacgtcgaaatc
ccgcgcgatgccgaggcgttgcagcaccgttcgggccgcaccggccgcgccggtcgcaag
ggcaccgcgatcctgatcgttccctatccgcgccgtcgccgggtcgagggtatgctgcgc
ggggcgcgcatcgacgccgaatggcgccgtgcgccgacgctcgaggaaatccgtgcacag
gatcgcgagcgtctgctggcggcgcttctggcgccggtcgaggtggacgagggcgatcgt
gagctggccacccgcctgctcgccgaaaagtcgcccgaggacatcgccgccgcgctggtc
cgcgcacaccgtgccgcgctgccccaggccgaggaactggtcgagggtgatgctccggcg
ccgcgcgagcgtcgcgaagggttcgacgacaccgcctggttccgcatgagcgtcggtcgc
agccagaatgccgatccgcgctggctgctgccgctgatctgccgtcgcgggcacatcacc
cgcaacgagatcggtgcgatccgcatccagccgaacgagacgctgttcgaaatcccgtcg
gcgctggcgtcgcgcttcatcgccgcgctgaagcggaccgaggccgatcatgccgaggac
gatatcgcgatcgagcaggccgatggccctcccgccggtggctcgggccatggcggtgcg
cgtcgtggcggtccgggcggcaaccgtccgatgggcggccgccccgccggcggccccggc
ggcccgcgccgctactcgccgcgtcccacccagggcggcccgcgcggtccgcgtcgcggc
tga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (15)   

Download RDF
DBGET integrated database retrieval system