KEGG   Sphingomonas sp. LM7: BXU08_04825
Entry
BXU08_04825       CDS       T04824                                 
Name
(GenBank) ribonuclease D
  KO
K03684  ribonuclease D [EC:3.1.13.5]
Organism
splm  Sphingomonas sp. LM7
Brite
KEGG Orthology (KO) [BR:splm00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:splm03016]
    BXU08_04825
Enzymes [BR:splm01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.5  ribonuclease D
     BXU08_04825
Transfer RNA biogenesis [BR:splm03016]
 Prokaryotic type
  3'processing and CCA adding factors
   3'processing factors
    BXU08_04825
SSDB
Motif
Pfam: DNA_pol_A_exo1 HRDC
Other DBs
NCBI-ProteinID: AQR73089
UniProt: A0A1S6FHG9
Position
complement(1035301..1036473)
AA seq 390 aa
MHIHGLIEDSTALANLCARFANKPYICVDTEFMRENSYWPELCLIQIADDEEAAAVDPMG
GIDMTPLLELMTNNEDVLKVFHAGGQDIEIVYNLTGKTPHPLFDTQVAAMALGQGEQIGY
SNLVDTYLGITVDKGARFTDWSRRPLDKRQIDYAICDVTYLSEIFPRMLEKLKKTGRGAW
LDQEMERLADPENYRNDPDQAWQRVRVSSRKPEVLGRLKALARWREIEAQGKDLPRGRII
KDETLADLAGTPPRKQGDLAKVRGLSPAWGGNDIGGRLMAALDGAKPMSGDELPARDDRK
PALGKDGALVADLLKLLLKIRAKEINVAARLLARSDDLEALAAGVRTDLSILEGWRFEQF
GRDALELVEGQLGFTVRNGKLKMTRTEEPS
NT seq 1173 nt   +upstreamnt  +downstreamnt
atgcatatccatggtcttatcgaggacagcaccgccctcgccaatctctgtgcccgtttc
gccaacaagccgtatatctgcgtggacacagagttcatgcgggaaaacagctattggccc
gagctctgcctcatccagatcgccgatgacgaggaagccgccgcggtcgatccgatgggc
ggaatcgacatgacgcctttgctcgagctgatgaccaacaacgaagacgtactcaaggtc
ttccacgccggcggtcaggacatcgagatcgtctacaatctcaccggcaagaccccgcac
ccgctgttcgacacccaggtcgcggcgatggcgctcggccagggcgagcagatcggctat
tcgaacctcgtcgacacctatctcggcatcaccgtcgacaagggcgcccgtttcaccgac
tggagccgccgcccgctcgacaagcgccagatcgattacgccatctgcgacgtcacgtac
ctctccgaaattttcccgcggatgctggagaagctcaagaagaccggtcgcggcgcctgg
ctcgaccaggagatggagcggctcgccgaccctgaaaattaccgcaacgaccccgaccag
gcatggcagcgcgtccgcgtctccagccgcaagcccgaagtgctcggccgcctcaaggcg
ctggcccgctggcgcgagatcgaggcgcagggcaaggatctgccgcgcggccgcatcatc
aaggacgaaacgctcgccgacctcgccggcacgccgccgcgcaagcagggcgatctcgcc
aaggtccgcggcctctcgccggcatggggcggcaatgacatcggcggacggctgatggcg
gcgctcgacggcgccaagccgatgtcgggcgatgaactgcctgcgcgcgacgaccgcaag
cccgcattgggcaaggacggcgcgctcgtcgcagacctgctcaagctgctgctcaagatc
cgtgccaaggaaatcaacgtcgccgcgcgcttgcttgcgcgctcggacgatctcgaggcg
ctcgccgcgggcgtacgcaccgacctgtcgatcctcgaaggctggcgcttcgagcagttc
ggccgcgacgcgctggaactggtcgagggtcagcttgggttcaccgtccgcaacggaaag
ctcaagatgacacgaaccgaggagccctcatga

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (11)   

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