KEGG T04383: K663

Sphingobium sp. MI1205: K663_09745

Entry

K663_09745        CDS       T04383

Name

(GenBank) putative helicase

K11927

ATP-dependent RNA helicase RhlE [EC:5.6.2.7]

Organism

spmi Sphingobium sp. MI1205

Pathway

spmi03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:spmi00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    K663_09745
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:spmi03019]
    K663_09745
Enzymes [BR:spmi01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     K663_09745
Messenger RNA biogenesis [BR:spmi03019]
Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     K663_09745

SSDB

Motif

Pfam:

DEAD Helicase_C ResIII UTP25 ERCC3_RAD25_C

Other DBs

NCBI-ProteinID:

AMK18327

UniProt:

A0A126R860

Position

1:complement(2033599..2034978)

AA seq 459 aa
MQFTDLGLAEPILKALAAKNYASPTPIQTQAIPVLLQGKDLCGIAQTGTGKTAAFALPSL
DHFARNPKPTPLQGCRMLVLSPTRELAAQIAQSFRDYGRFMKLSIEVVFGGVPINRQIRA
LGRGVDIVVATPGRLLDLIDQRAFTIKDTEIFVLDEADQMMDMGFIHPLKRIAKLLPRDR
QNLFFSATMPSEIESLAAQFLNNPVKVSVAPQATTAERVRQQATFVNQVEKQALLTLTVK
NEPIDRALIFTRTKHGADRVVRFLEGAGIQAVAIHGNKSQAQRTTALQAFRHGHVKLLVA
TDIAARGIDVSGVSHVINFELPNVPEQYVHRIGRTARAGAEGVAISFVADDEKPYLKAIE
RTTRIKLDIVPLPENFVEAVRNLPKAAPQRKGREQTSEQKAKRVEGQRRYQDDQRQQRGT
AERAHRPDGDAAKPAKKNFRRGRSGVGAHKGAVQKVGGR

NT seq 1380 nt +upstreamnt +downstreamnt
atgcaattcaccgaccttggtctcgccgagcccatcctgaaggcgctcgccgccaagaat
tatgcttcccccacgccgatccagacgcaggccattccggtcctgctgcagggcaaggat
ctgtgcggcatcgcgcagaccggcaccggcaagacggccgccttcgcgctgcccagcctg
gatcacttcgcccgcaatcccaagccgaccccgctccagggctgccgcatgctcgtcctg
tcgccgacccgcgaactggcggcgcagatcgcgcagagcttccgcgactatggtcgcttc
atgaagctttccatcgaagtcgtcttcggcggcgtgccgatcaaccgccagattcgggcg
ctgggccggggcgtcgatatcgttgtcgccacgcccggccgcctgctcgacctgatcgac
cagcgcgccttcaccatcaaggatacggaaatcttcgtcctcgacgaagccgatcagatg
atggacatgggcttcatccacccgctcaagcgcatcgccaagctgttgcccagggatcgg
cagaacctgttcttctccgccaccatgccaagcgagatcgaatcgttggccgcgcagttc
ctgaacaatcccgtgaaggtcagcgtcgctccccaggccaccacggccgaacgggtccgc
cagcaggcgactttcgtcaaccaggtggaaaaacaggcgctcctcacgctgaccgtgaaa
aatgagccgattgaccgcgccctgatcttcacccgcaccaagcatggcgcggaccgggtc
gtgcgctttctggaaggcgccggcatccaggctgtcgcgatccacggcaacaagagccag
gcccagcgcaccaccgcgcttcaggcgttccgtcacggccatgtgaagctgttggtggcg
accgacatcgccgcgcgcggaatcgacgtttccggcgtcagccatgtcatcaatttcgag
ctgcccaacgttcccgaacaatatgtccatcgcatcggccgtactgcccgcgcgggggcg
gagggcgtggcgatcagtttcgtcgccgatgatgagaagccctatctgaaagctatcgag
cggaccacgcggatcaagctcgacatcgtgccgctgcccgagaatttcgtggaagcggtc
cgcaatctccccaaggccgcgccccagcgcaaggggcgcgaacagacgtccgaacagaag
gcgaagcgcgtcgagggtcagcgccgctatcaggacgatcagaggcaacagcgcggtacc
gctgaaagggcgcatcgtcccgacggagacgccgccaagcctgccaagaaaaacttccgg
cgtggtcgcagcggtgtcggcgcgcataagggcgcggtgcaaaaggtcggcgggcggtaa

All links

Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (14)   

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