KEGG   Schizosaccharomyces pombe (fission yeast): SPAC17H9.02
Entry
SPAC17H9.02       CDS       T00076                                 
Name
(RefSeq) putative TRAMP complex ATP-dependent RNA helicase
  KO
K12598  ATP-dependent RNA helicase DOB1 [EC:3.6.4.13]
Organism
spo  Schizosaccharomyces pombe (fission yeast)
Pathway
spo03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:spo00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SPAC17H9.02
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:spo03019]
    SPAC17H9.02
   03041 Spliceosome [BR:spo03041]
    SPAC17H9.02
   03009 Ribosome biogenesis [BR:spo03009]
    SPAC17H9.02
   03016 Transfer RNA biogenesis [BR:spo03016]
    SPAC17H9.02
Messenger RNA biogenesis [BR:spo03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    TRAMP complex
     SPAC17H9.02
Spliceosome [BR:spo03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    SPAC17H9.02
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    SPAC17H9.02
Ribosome biogenesis [BR:spo03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    SPAC17H9.02
Transfer RNA biogenesis [BR:spo03016]
 Eukaryotic type
  tRNA degradation factors
   TRAMP complex
    SPAC17H9.02
SSDB
Motif
Pfam: DSHCT MTR4_beta-barrel DEAD MTR4-like_stalk Helicase_C ResIII nSTAND3 AAA_22
Other DBs
NCBI-GeneID: 2542173
NCBI-ProteinID: NP_593572
PomBase: SPAC17H9.02
Ensembl: SPAC17H9.02
UniProt: O13799
Position
I:2004745..2008108
AA seq 1030 aa
MSENSTDSKNFQFSEGSRESSNDELKVLLRDTETKEDEKSSFSNSEEESIIENLSDSSVN
KEYAKNSLKLSDAVSESKYLNPLLKDKRHDRSFALHKVVVPDDYDYIPLNKHIPSDPPAK
TYPFELDPFQSTAIKCVERMESVLVSAHTSAGKTVIAEYAIAQALKNRQRVIYTSPIKSL
SNQKYRELLSEFGDVGLMTGDVSINPSASCLIMTTEILRAMLYKNSEIMHEIAWVIFDEV
HYMRDKDRGVVWEETLILLPDAIRFIFLSATLPNALQFARWISEIHKQPCHVVYTDYRPT
PLQHFIYPQGADGIYMLVDEKNKFKTENFKKVLEVLDHSTRQENYSKSSKKVKKSSSLER
IINMVLSNRYDPIIVFCFSKKECEINAHQFGKLDLNDTENKELVTEIFDSAINQLSEEDR
GLRQFEEMRSLLLRGIGIHHSGLLPILKELVEILFQEGLVRILFATETFSIGLNMPARTV
LFTKAQKFSGNNFRWLTSGEYMQMSGRAGRRGIDTKGLSIVILDQSIDEQAARCLMNGQA
DVLNSAFHLSYGMILNLMRIEEISPEDILKKSFYQFQNMESLPLIKEELMQLKNEETSIN
IPNETAVKEFHDLKLQLEKYGEEIQKVMTHPDNCLPYLQSGRLIQIKLGGIIFPWGVLVN
VIKREFDPNTREQVAPHETYVLDVLLPISSNSMSNHKVNPSILVPPRPNETPLYEIVSVL
LTAVCNISSIRIYMPRELNSNESKLRAYRRVNEVIEEFKEIPYLDPLEHMHIESSTLSLS
LRKLEILEPKLFDSPYYKDSKHRAEYHEFRKKLNLRAQIKDISTKITNTEAIIQLRELKI
RQRVLRRLGFCTLENVIDIKGRVACEITSGDELLLVELIFQGFFNQMPPEEIAAALSCFV
YEDKSEVSTLNLKEPFKKMYLTIIEAAKRIATVSLESKLQFNESDYLHQFKPDIMEPVSL
WINGASFQEICIVSKLYEGSIVRTFRRLDELLKQLEHAAIVLGNNELKEKSVLTEQKLHR
DIIFSASLYL
NT seq 3093 nt   +upstreamnt  +downstreamnt
atgtcagaaaacagtacagactctaaaaatttccaattcagtgaaggttcacgcgagtct
agcaatgatgagctcaaagtattgttaagagatacagaaactaaagaggatgagaagtcg
tctttttcaaactctgaagaagagtcgataatcgagaatttgtcggactcttcagtcaat
aaggaatatgctaaaaattccttgaaattgagtgacgcggtttctgagtctaaatacttg
aatccattacttaaagacaaaagacatgataggagcttcgcattacacaaagttgttgtt
cctgatgattacgattacattcctctaaataaacatatccctagtgatcctcctgctaaa
acgtatcctttcgaactagatccttttcaatctactgcaataaagtgtgtggaacgaatg
gaatcagtccttgttagtgcacacacctcggcaggtaaaacggttattgctgaatatgct
attgctcaagcattgaaaaatcgacagagagtaatttatactagtcctataaagtcttta
agtaaccaaaagtatcgagagctactttccgaatttggtgatgttggtttaatgaccggt
gatgtctctattaatccatcagctagttgtcttatcatgactactgaaattctacgtgca
atgctatacaaaaactcagaaatcatgcacgaaattgcctgggttatctttgatgaagtg
cactatatgcgtgataaagatcgaggagttgtatgggaagagactttgattttgttacca
gatgctatacgctttatttttctatctgctactttacctaacgcattacaatttgctcgt
tggatttcagagatccacaagcaaccctgccatgttgtttatacagattaccgacccact
ccactgcaacattttatttaccctcaaggagctgatgggatttatatgttagttgacgag
aaaaacaagtttaaaactgaaaactttaaaaaagtactggaagtgcttgatcattccaca
cgccaggaaaactattccaaaagttccaaaaaggttaagaagtcatcttcattagaaaga
attatcaatatggtcttatccaatagatatgatccaatcattgtattttgctttagtaag
aaagagtgtgaaatcaatgctcaccaatttggaaaactggacttaaatgatacggaaaat
aaagaattagttacagaaattttcgactctgctatcaatcaactttcagaagaagataga
ggcctccgtcaatttgaagaaatgcgttcgcttttacttcgtggcataggtattcatcat
tctggtttgcttcctattttgaaagaattggtcgaaatattatttcaagaaggtcttgtt
agaattttgtttgcaacagaaactttctcaattgggttaaatatgcctgctcgaacagtt
ctgtttacaaaagctcaaaagttttcaggaaacaattttcgatggcttacatctggtgaa
tatatgcaaatgagcggacgtgcaggtagaagaggaattgatactaaaggattatccatt
gtaatattggatcaatccattgatgagcaagctgctcgatgtttgatgaatggtcaagct
gacgttcttaattccgctttccatcttagctatgggatgatattaaatctcatgagaatt
gaggaaatcagtccagaagatatattaaaaaaaagcttttatcagttccaaaatatggaa
tctttacctttaattaaagaagaacttatgcaattaaaaaacgaagagacttcaattaat
attcccaatgagacagctgtcaaggagtttcacgatttaaaattacagttagaaaagtat
ggggaagaaattcaaaaggtaatgacccatcctgataattgtttgccttatctgcaatct
ggccgacttatacaaataaaattagggggtattatatttccttggggtgtacttgtcaat
gtcataaaaagagaatttgatccaaacactcgtgaacaagttgccccgcacgaaacctat
gttcttgatgttttacttcccatctcctcaaactccatgtcaaatcataaagtgaatccc
tcgattttagtaccccctcgtccgaacgagacacctctttatgaaatagtttctgtttta
ctgactgctgtttgtaacatttcttctatacgtatttatatgccacgagagttgaactcg
aatgaatctaagctgcgtgcttatagacgtgtaaatgaggttatagaagaatttaaggaa
ataccttatttagaccccttagaacatatgcatattgaaagctctacgttaagtttatct
cttcgaaaacttgaaattcttgaacccaaactcttcgacagcccttactacaaggattct
aaacatagggccgaatatcatgaatttagaaaaaaactcaacttacgagctcagataaaa
gatatatcgacgaaaattacaaatactgaggcgattatacaacttcgagaacttaaaatt
agacaaagggttttacggcgacttggattctgcaccttagaaaatgttattgatattaaa
ggaagggtagcttgtgaaattacttctggagacgaactgctgttggtggagcttatcttc
caaggtttttttaaccaaatgcctcctgaagaaattgctgctgcactcagttgctttgtt
tatgaagacaaatctgaagtttccacattgaatttgaaagagcctttcaaaaagatgtat
ctaacgattattgaagcagcaaagcgcatagcaaccgtttcgttagaaagtaagcttcaa
tttaacgaaagcgactacctccatcagtttaagcctgacattatggagcctgtatcttta
tggatcaatggagcctcgtttcaagaaatatgcattgtctccaagctttatgaaggttca
attgttcgaacgttcaggagattagatgagttgttaaaacaacttgaacatgctgctatt
gtattaggcaataatgaattgaaagagaagagtgtgttgactgaacaaaagttgcatcgt
gatatcatattttcggcctctctatacctctaa

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (34)   
   KEGG ORTHOLOGY (1)   
   RefGene (25)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (3)   
   OC (1)   
   POMBASE (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (8)   
   Pfam (8)   
All databases (54)   

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