KEGG   Schizosaccharomyces pombe (fission yeast): SPAC1B3.05
Entry
SPAC1B3.05        CDS       T00076                                 
Symbol
not3
Name
(RefSeq) putative CCR4-Not complex subunit Not3/5
  KO
K12580  CCR4-NOT transcription complex subunit 3
Organism
spo  Schizosaccharomyces pombe (fission yeast)
Pathway
spo03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:spo00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SPAC1B3.05 (not3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:spo03019]
    SPAC1B3.05 (not3)
Messenger RNA biogenesis [BR:spo03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     SPAC1B3.05 (not3)
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     SPAC1B3.05 (not3)
SSDB
Motif
Pfam: Not3 NOT2_3_5 Syntaxin_2 FtsL_2
Other DBs
NCBI-GeneID: 2542126
NCBI-ProteinID: NP_594789
PomBase: SPAC1B3.05
Ensembl: SPAC1B3.05
UniProt: O13870
Position
I:4934547..4937012
AA seq 640 aa
MSARKLQVEIEKTFKKVTDGIAIFDEVYEKLSASNSVSQKEKLEGDLKTQIKKLQRLRDQ
IKTWASSNDIKDKKALLENRRLIEAKMEEFKAVEREMKIKAFSKEGLSIASKLDPKEKEK
QDTIQWISNAVEELERQAELIEAEAESLKATFKRGKKDLSKLSHLSELESRIERHKWHQD
KLELIMRRLENSQISPEAVNDIQEDIMYYVECSQSEDFAEDENLYDELNLDEASASYDAE
RSGRSSSSSHSPSPSASSSSSSENLLQDKAEAEEKVSADASVQDIAEKESLDADKELATN
DQEDDEEENQAETQKDGAISNNENMQSEVQTTNPSASTSAVTNITKPTLIQNPSTPLSVS
NSKVASPETPNATHTAPKVEMRYASAAAAAAAALAKESPSHHYIMQQVRPETPNSPRLNS
TVIQSKWDSLGHTASPKMQTQPVRSVSQSSATTETNVKPTKEENADVPVSSPDYLKDLVN
ALNTSKEQHKGAIDKEKLTEALNISCVYVPDATDAAKPQYYIPKDPYPVPHYYPQQPLPL
FDSSEMTELVDPDTLFYMFYYRPGTYQQYIAGQELKKQSWRFHKKYTTWFQRHEEPKMIT
DEFESGSYRYFDFEGDWVQRKKADFRFTYQYLEDDDDWTR
NT seq 1923 nt   +upstreamnt  +downstreamnt
atgtcggcgcgaaagttgcaagtggaaattgagaagacctttaaaaaagtgactgatggg
attgcgatttttgacgaggtttacgaaaagctaagcgccagtaatagcgtctctcaaaaa
gagaaactagagggtgatttgaagactcaaattaaaaaactacaacgtcttcgtgaccag
attaagacttgggctagcagcaatgatatcaaagataaaaaggccttgttagagaacagg
cggcttattgaagctaaaatggaggaatttaaagctgttgagcgagagatgaagataaaa
gctttcagtaaagagggccttagcatcgcttccaagttggatcctaaggaaaaagaaaag
caagatactattcagtggatttccaatgctgtagaagaactagaacggcaagcagaattg
atcgaagcagaggcggaaagtttaaaagctacatttaaaagaggtaaaaaagatttatct
aaactttcgcacttgtcagaattggaatctcgaattgagcgacacaaatggcatcaagac
aaactcgaacttatcatgaggagactggaaaactcccaaatttctccagaggccgtgaat
gatattcaagaagatataatgtattatgtagagtgtagtcaatcagaagattttgctgaa
gacgaaaacctctatgacgagcttaatctagatgaagcctccgcctcttatgatgcagag
aggtccggtcgttcctcatcttcttctcattccccttctccttctgcatcctcttccagt
tcttcggaaaatttgcttcaggataaagcagaagctgaagaaaaagtttctgcagatgct
tccgtacaagacattgcagaaaaagaaagtcttgatgctgataaagagttggcgactaat
gaccaagaagatgatgaagaggagaatcaggctgaaacccaaaaggatggtgctatttcc
aataatgaaaacatgcaatctgaagttcaaacaaccaacccttcggcttctacctctgca
gtcaccaatattacaaaaccaacgcttattcagaacccttctactccgctaagtgtctcc
aattcgaaagttgcttctcccgagactccaaatgcaacgcatactgctcccaaagttgag
atgagatatgcttctgctgcagcggcagcggctgcagcgctggcgaaggaatctcccagt
caccattatattatgcaacaagttcggcctgaaaccccaaactctcctcgtttaaattct
acagtaattcaatctaaatgggatagtttgggccacacagcctctccaaaaatgcaaacg
caacccgttcgatctgtctctcaaagtagcgcaactacagaaacaaatgttaagcctacg
aaagaggaaaatgctgatgtgccagtatcatcgccagactatctcaaggatttagttaac
gccctaaatacttccaaggagcagcacaaaggagcgattgacaaagaaaagctaaccgag
gcccttaacattagttgcgtgtacgttccggatgctacagatgctgccaaaccgcaatat
tatattcctaaagatccttatcctgttcctcattattacccgcagcaaccactcccttta
tttgactcttctgaaatgactgagcttgttgatcctgatactttgttttatatgttttat
tatcgacctgggacttatcaacagtatattgctggtcaggaattgaaaaagcaaagctgg
agatttcacaaaaaatacaccacgtggttccagcgccatgaagagccaaagatgatcaca
gatgaatttgaaagtggtagttatcgatactttgattttgagggagattgggtgcagaga
aaaaaagcagatttccggtttacatatcagtacctagaagacgatgacgactggacacga
taa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (36)   
   KEGG ORTHOLOGY (1)   
   RefGene (27)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (3)   
   OC (1)   
   POMBASE (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (48)   

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