KEGG   Schizosaccharomyces pombe (fission yeast): SPBC17D1.03c
Entry
SPBC17D1.03c      CDS       T00076                                 
Name
(RefSeq) putative exosome subunit Rrp43
  KO
K12586  exosome complex component RRP43
Organism
spo  Schizosaccharomyces pombe (fission yeast)
Pathway
spo03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:spo00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SPBC17D1.03c
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:spo03019]
    SPBC17D1.03c
Messenger RNA biogenesis [BR:spo03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     SPBC17D1.03c
SSDB
Motif
Pfam: RNase_PH RNase_PH_C
Other DBs
NCBI-GeneID: 2540189
NCBI-ProteinID: NP_596385
PomBase: SPBC17D1.03c
Ensembl: SPBC17D1.03c
UniProt: Q10205
Position
II:complement(3331682..3333060)
AA seq 270 aa
MKTVSGVKQLSFTPSIFKKITPEQYLSHLLNQDVRSDGRSVSEFREIVINDNCISTANGS
AIIRAGENVFVCGIKAEIAEPFENSPNEGWIVPNLELSPLCSSKFKPGPPSDLAQVVSQE
LHQTLQQSNLINLQSLCIFEKKAAWVLYADIICLNYDGSAFDYAWAALFAALKTVKLPTA
VWDEDLERVICASTLTRPVQLSTEVRSFSWSVFDDKLLADPTDEEEDLSTEFLTIMLNSS
KNIVKIIKLGGTHIQPLLLKKCIEVARSKF
NT seq 813 nt   +upstreamnt  +downstreamnt
atgaaaactgtttcgggggtaaaacagctttcatttacaccttcaatttttaagaaaatc
acgcctgagcagtatttatcacatcttcttaatcaggatgttcgatcagatgggcggtct
gtatcagaattcagagaaattgtaattaatgataattgcatatctactgctaatggtagt
gctatcattcgagctggcgaaaatgtctttgtgtgtggaataaaagcagaaattgctgaa
ccttttgaaaactctcccaatgaaggttggattgttcccaatcttgaattatcacctctt
tgcagtagcaaatttaaacctggccctccttctgacttggcgcaagttgtctcgcaggaa
ttgcatcagactttgcaacaatctaacttgattaatttacagtccctatgcatttttgaa
aaaaaagcagcctgggtattgtatgctgatattatttgtttaaattatgatggaagtgcc
ttcgattatgcatgggcagctttgtttgccgctttaaaaactgttaaattaccaactgct
gtttgggatgaagatttagagagggttatctgtgcttctacccttacaagaccagttcaa
ttaagtactgaagttcgttctttctcatggtcagtatttgacgacaagttgttagccgac
cctacagacgaggaggaggacctttcaactgaatttttgacaattatgcttaatagctcc
aaaaatattgttaagataataaagcttggaggcactcacattcaaccccttttattaaaa
aagtgtattgaggttgcaaggtctaagttctaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (15)   
   KEGG ORTHOLOGY (1)   
   RefGene (6)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (3)   
   OC (1)   
   POMBASE (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (25)   

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