KEGG   Schizosaccharomyces pombe (fission yeast): SPBC211.02c
Entry
SPBC211.02c       CDS       T00076                                 
Symbol
cwf3
Name
(RefSeq) protein Cwf3
  KO
K12867  pre-mRNA-splicing factor SYF1
Organism
spo  Schizosaccharomyces pombe (fission yeast)
Pathway
spo03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:spo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    SPBC211.02c (cwf3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:spo03019]
    SPBC211.02c (cwf3)
   03041 Spliceosome [BR:spo03041]
    SPBC211.02c (cwf3)
Messenger RNA biogenesis [BR:spo03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     SPBC211.02c (cwf3)
Spliceosome [BR:spo03041]
 Complex B
  Other components
   Prp19-related factors
    SPBC211.02c (cwf3)
 Complex C
    SPBC211.02c (cwf3)
SSDB
Motif
Pfam: Suf TPR_14 TPR_16 TPR_2 NRDE-2 TPR_17
Other DBs
NCBI-GeneID: 2540753
NCBI-ProteinID: NP_596612
PomBase: SPBC211.02c
UniProt: Q9P7R9
Structure
Position
II:complement(3870710..3873758)
AA seq 790 aa
MGDVIPLKVNFDLINVDDEPFELELLRDPYSLKSWLRYIKTHEGSTLEKRVLLFERACSE
LPGSYKIWKSYLELRVAHVEHLNPYFHAEAFASVNDCFERSLILLHKMPVIWKLYLQFLM
KQPNVTKIRCTFNSALRALPVTQHDDIWDMFTKYAEDIGGLFCIHVYRRYIQVEPRAIEN
YIEILCKLGLWNEAARQYEDILNRPVFLSAKRKSNYQIWLEFSELVVQHPDHTQNIDVEK
VFRAGIKRFSDQAGKLWTYLAQYYIRIGDYEKARSTFYEGMNNIMTVRNFTIIFDAFVEF
EEQWLSARVEASSGNANDELSIDFHMAWLEKILDKRPLYINDVLLRQNINNVDEWLRRVK
FLEDDSEKVVQVYTDAIKNVNPKLAHGSLGKLFSEFARFYENFDDLEQSRIIFEKATHVP
YKTVNELAQVWIDWAEMELRHQNFDAARKLIGDAVHAPRKSHISFFDESLSPQVRLHKSS
KIWMYYLDLEESVGTIETTRKLYDRVFELKIATPQVVVNYANLLEENAYFEDSFKIYERG
VALFSYPVAFELWNLYLTKFVKRYQGTHMERTRDLFEQALEGCPPEFSKSIYLLYADFEE
KFGKAKRSISILEKAADKVKTADRLAIYNVLLVKVALNYGVLATRTVYEKAIESLSDSEV
KDMCLRFAEMETKLGEIDRARLIYIHGSQYCDPRVETDYWKAWQEFEIRYGNPEETVKEM
LRIKRSVQTKFSTDSLHIAKRAAKIESAAAPMDPMEQLEMEKSEGPKALAGFVLSKSNPQ
ETSKITGEEN
NT seq 2373 nt   +upstreamnt  +downstreamnt
atgggagatgttattccactgaaagttaattttgatctaattaatgttgatgacgagccg
tttgagcttgaattgctacgtgatccatattctctgaaaagttggttacgatatataaag
acccatgaaggatctactttggaaaagcgtgtgcttttatttgaaagagcttgttcagaa
ctcccgggaagctataaaatatggaaaagctatttggaactacgtgtagcgcatgttgaa
catttgaacccatattttcatgccgaagcttttgcttctgtaaacgattgttttgagcgc
tctttgattttattgcataaaatgcctgttatttggaaactatatttacaatttttgatg
aaacaaccaaatgtcactaagattcgttgtacatttaactctgcacttcgcgccttaccg
gtaactcagcacgatgatatttgggacatgtttacgaaatatgctgaagatattggagga
ttattttgcatccatgtctaccgcagatatatacaagtagaaccaagagcaattgaaaac
tacattgagatactttgtaaattagggctgtggaatgaagctgctcgacaatatgaggat
attttaaatcggcccgtgtttttatcagcaaaaaggaagagcaattatcagatatggctc
gagttttccgagttagttgttcagcatcctgaccatacgcaaaacatagacgtagaaaag
gtttttagagctggcattaaaaggttttctgatcaagcagggaaactatggacttatttg
gcacaatattatatacgcattggtgactacgagaaggcaagaagcacattctatgaaggg
atgaataacataatgactgtaagaaattttacaattatattcgatgcttttgttgaattc
gaagagcaatggctatctgcacgagttgaagcaagcagcggaaatgcaaatgacgaatta
agtatcgattttcatatggcctggctcgagaaaatacttgacaaacgtccgctttatatc
aatgatgtattattaaggcaaaatataaataacgttgacgaatggcttcgccgagtcaag
tttttagaagacgacagcgaaaaagttgttcaagtttacacagacgctataaaaaatgta
aatccaaagctggcgcatggctccctcggcaaattgttttcagagtttgctcgtttttat
gaaaattttgatgatttagaacaatcaaggataatttttgaaaaggctactcatgtacca
tataaaacagtcaatgagttagcacaagtttggattgactgggccgagatggaacttcga
catcaaaattttgacgctgcgagaaaattaataggagatgccgttcatgctcctagaaaa
agtcatatcagcttttttgatgaatcactcagtccacaagtacggctacacaagtcatct
aagatatggatgtattatcttgatcttgaggaaagcgttggtacgattgaaactacacgc
aaattgtacgaccgcgtctttgaactaaaaattgctactccccaggtggttgtcaattat
gcaaatctcttagaggagaatgcttattttgaagattcatttaaaatttatgagagaggt
gttgcgttatttagttatcccgtggcttttgaactttggaatttatatttaacaaaattt
gttaaacgatatcaaggaacgcatatggaaaggaccagggatttatttgaacaagcatta
gaaggatgtccgcccgaattttcgaaaagtatttatcttctgtatgccgatttcgaagaa
aagtttggcaaagcaaaaagatccatttctattttagaaaaagcggccgacaaggttaaa
acagcagaccgtcttgctatttacaatgtgttactcgttaaagtggcattaaattatggt
gtactggcgacaaggacagtttatgagaaggctattgaatccctgagtgactcagaagtc
aaagatatgtgcttaaggtttgctgaaatggagacgaaacttggtgaaatcgatcgtgct
cgtttaatatatattcatggaagtcaatactgtgatccaagagttgaaacggattattgg
aaagcatggcaagaatttgaaataaggtacggaaatccagaagaaacagttaaagaaatg
cttcgtattaaacggtctgtacaaactaagtttagcactgattcccttcatatagcgaag
agagcagctaaaattgaaagtgcagcagcaccaatggatccaatggaacagcttgaaatg
gaaaaatctgaaggacctaaggcacttgcgggttttgttctttcgaaaagcaatccccaa
gaaacttcaaaaattactggtgaggaaaactaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (32)   
   KEGG ORTHOLOGY (1)   
   RefGene (24)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   RIKEN BRC-DNA (3)   
   OC (1)   
   POMBASE (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
3D Structure (1)   
   PDB (1)   
Protein domain (6)   
   Pfam (6)   
All databases (48)   

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