KEGG   Schizosaccharomyces pombe (fission yeast): SPBC336.14c
Entry
SPBC336.14c       CDS       T00076                                 
Symbol
ppk26
Name
(RefSeq) PAN complex subunit Ppk26
  KO
K12572  PAB-dependent poly(A)-specific ribonuclease subunit 3
Organism
spo  Schizosaccharomyces pombe (fission yeast)
Pathway
spo03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:spo00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SPBC336.14c (ppk26)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:spo03019]
    SPBC336.14c (ppk26)
Messenger RNA biogenesis [BR:spo03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     SPBC336.14c (ppk26)
  mRNA degradation factors
   3'-5' decay
    Pan complex
     SPBC336.14c (ppk26)
SSDB
Motif
Pfam: Pan3_PK Pkinase PK_Tyr_Ser-Thr Det1 Tox-ART-HYE1 APH_6_hur
Other DBs
NCBI-GeneID: 2540231
NCBI-ProteinID: NP_596134
PomBase: SPBC336.14c
Ensembl: SPBC336.14c
UniProt: Q9UST1
Position
II:complement(2765269..2767767)
AA seq 589 aa
MSVRKNSPASPKPTSRSRESSRSPSVTDLKDHSKAKRTLCRNILLYGSCKHSENGCAFRH
DGPFIPSSENLEQYSVKKKLNAASASFQPVRALPVKAAGAAVFVPKSQEKSLFLSRERTP
VALSPGSHAINPYNNASMLVNEPFHDDSGVYYTRQNQFKPTLYNLYNPQPSPMPTLLPYE
RTVNGLFIDDTTRERIERKSEASRQTISALPSIISSYTSLAPLNTKLYRYKEQIGFSSWT
YKCTSSIDGNAYVLKRLQDCSINIDTSTVDKLKNVFHPNIVPFHSAFHTDTFHDSSLLLI
YDFYPCTTTLGELYLNNSKNSVKLEENRKIPERELWNYFFQLTIALSYLHKSGFACNKLT
PSRILVDQTERIRISGCADYELVVSNKPPLEERKKQDFVDLGVVIANLATGRTDMDMSSA
ARAIYSTYSREFYKAVLYFVSEVPEDKNLELFLQNHIESFFPIMSSPYVECEKMERKISD
AFQHGRFFNILCKIMFIIDNNRASREYPIAREKEISLIYLLRDYLFHQIDEDECPVIDLY
QVLNRLGKLDAGINQAIALISRDELDCVSVSYGELKAWLDNVYEMEINS
NT seq 1770 nt   +upstreamnt  +downstreamnt
atgagtgtgaggaagaattctcctgcaagcccaaagccaacttcccgttctagggagagt
tccaggtctccgtcagtgactgatttgaaagaccattccaaagctaaacgaacattatgt
agaaatatcttactttatggatcctgtaagcattcagaaaatggatgtgcttttcgacat
gatggtcctttcatcccttcttcagagaatttggagcaatactcagttaagaaaaaactg
aatgctgcgtcggcctcttttcaacctgttcgcgctttaccagtaaaggctgctggcgct
gcagtatttgttcctaaatcacaagaaaaatctctttttctatctagagagcgtacccct
gttgcgctttcaccaggtagtcatgctattaatccttacaataatgcatctatgttggtc
aatgagccttttcatgatgactctggggtttattatactcgtcaaaaccagtttaaaccc
acattgtacaatttatataatccgcaaccttctcccatgccaactttacttccttatgaa
agaactgtaaacggtctatttattgatgatacgactagagaaagaatcgagagaaagagc
gaggcatcccgtcagacaatttcagcgcttccgtctattatatcttcatatacttctttg
gcgccactgaatacaaagctttatcggtataaagagcaaattggattctcttcttggacg
tacaaatgcacttcttccatcgatgggaatgcttacgttttgaaacgactccaagactgt
tcaattaatattgatacgtcgactgtcgacaagcttaaaaatgtttttcatccaaatatc
gtaccattccattctgcttttcatactgatacatttcatgattcttcgttactattaatt
tatgatttttatccgtgtactacaacccttggtgagctctacctaaacaattctaaaaat
tctgtcaagttggaggaaaatagaaaaattccagaacgagagttatggaattattttttc
cagcttactatcgctttgtcatatctacataaatccgggtttgcttgcaacaagcttact
ccgtcgagaatccttgtggatcaaactgaaaggattcgtattagtggttgcgctgactat
gaattggtagtgtcaaacaagcctccattagaggaacgaaagaagcaggattttgtagat
cttggagttgtgattgcgaatttagctactggaagaactgatatggacatgtcttcagcc
gcacgagcaatttatagtacatattcgagggaattttataaagcggttttatactttgta
tcggaagttcctgaggataaaaacttggagttgtttttgcaaaatcacatagaaagtttt
ttccctataatgagttcaccatacgtggaatgcgaaaaaatggagagaaaaatttcggac
gctttccaacacggtcgattttttaatattttgtgcaagattatgtttattattgataat
aatagagcttctcgtgaatatcctatcgcacgagaaaaagaaatttcattaatctactta
ttacgagattatcttttccatcagatagatgaagatgagtgtcctgtgatagatttatat
caagtgctgaatcgcctgggaaagcttgatgccggtataaatcaagccatcgcattaatt
tcccgagatgaacttgattgtgtttcagtttcttatggggagctaaaagcttggttggac
aacgtttacgaaatggaaataaattcttaa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (31)   
   KEGG ORTHOLOGY (1)   
   RefGene (22)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (3)   
   OC (1)   
   POMBASE (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (45)   

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