KEGG   Schizosaccharomyces pombe (fission yeast): SPBC3D6.08c
Entry
SPBC3D6.08c       CDS       T00076                                 
Symbol
lsm1
Name
(RefSeq) putative mRNA-decapping complex subunit lsm1
  KO
K12620  U6 snRNA-associated Sm-like protein LSm1
Organism
spo  Schizosaccharomyces pombe (fission yeast)
Pathway
spo03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:spo00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SPBC3D6.08c (lsm1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:spo03019]
    SPBC3D6.08c (lsm1)
Messenger RNA biogenesis [BR:spo03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     SPBC3D6.08c (lsm1)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     SPBC3D6.08c (lsm1)
SSDB
Motif
Pfam: LSM Hfq
Other DBs
NCBI-GeneID: 2540520
NCBI-ProteinID: NP_595520
PomBase: SPBC3D6.08c
Ensembl: SPBC3D6.08c
UniProt: P87173
Structure
Position
II:complement(1284338..1285133)
AA seq 140 aa
MNQATQIIPFTTSGSLVDYVDRKVIVVLRDGKKLIGILRSFDQFANLMLQYTIERIYVDD
MYGDIDRGVYIVRGENVVLLGELDLDKEYDAVKQLRRMPAEELYPLAKLHEEEKKKNIRE
KGKYLHSVGFSVDGGHDDLY
NT seq 423 nt   +upstreamnt  +downstreamnt
atgaatcaagctacacagattatcccattcacaacttctgggtcacttgttgactacgta
gacagaaaagtgattgttgttttacgagatggaaaaaaactgattggaattttaaggtcc
tttgatcaatttgcaaatttaatgttgcaatacacgattgagaggatctatgtggatgat
atgtacggggacatagacagaggtgtgtatattgttcggggcgagaacgtcgtgctttta
ggtgaattggatttggataaggagtatgatgcagtcaaacaattgcgacgtatgcctgct
gaagaactgtatcctttggcgaagcttcatgaagaagagaagaagaaaaatatacgtgag
aagggcaagtaccttcattctgtaggctttagtgttgacggcggacatgatgatttgtat
tag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (10)   
   KEGG ORTHOLOGY (1)   
   RefGene (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (3)   
   OC (1)   
   POMBASE (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
3D Structure (2)   
   PDB (2)   
Protein domain (2)   
   Pfam (2)   
All databases (22)   

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