KEGG   Schizosaccharomyces pombe (fission yeast): SPBC887.18c
Entry
SPBC887.18c       CDS       T00076                                 
Symbol
hfi1
Name
(RefSeq) SAGA complex subunit Hfi1
  KO
K11362  transcriptional coactivator HFI1/ADA1
Organism
spo  Schizosaccharomyces pombe (fission yeast)
Brite
KEGG Orthology (KO) [BR:spo00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:spo03021]
    SPBC887.18c (hfi1)
   03036 Chromosome and associated proteins [BR:spo03036]
    SPBC887.18c (hfi1)
Transcription machinery [BR:spo03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    SAGA/TFTC/STAGA complex
     SPBC887.18c (hfi1)
Chromosome and associated proteins [BR:spo03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    SAGA complex
     SPBC887.18c (hfi1)
    SLIK complex
     SPBC887.18c (hfi1)
SSDB
Motif
Pfam: SAGA-Tad1
Other DBs
NCBI-GeneID: 2541202
NCBI-ProteinID: NP_596492
PomBase: SPBC887.18c
Ensembl: SPBC887.18c
UniProt: O94301
Position
II:complement(3578033..3579743)
AA seq 339 aa
MTEGVTVQKVQSASSNGHKPNTVISQIISEMQSLLGSSFEVYTKTMTDFLIGQLSRKEMK
SMLLTFAGKSNFDKLHNSIIFHILKLMQKNNDTFSALHHLPWFKRKKVDNSLFLHKKISS
QNAQVRLIKRIVMSLSYKDRARIKTALKEKPVTPSLISGLLLETRIAKLPKIPVSRDKLN
SVFVNDIKAGYVAPLACETLELPDSESLKERITAISLENGLLGGVQKGVSDIILAGLESH
LKNILSRCFSILNKNIRQKNTENDAAGFTINDLNLAWTIEPHAFVEQYPQKLRMPFLLHD
SYTEDEISICAESPSYMLASNDAQSDRNSVASLLDEVLS
NT seq 1020 nt   +upstreamnt  +downstreamnt
atgacagaaggagttactgtacaaaaagttcaaagcgctagctcgaatgggcacaaaccc
aacacagtaatttcgcaaataatctcagagatgcaatcacttttgggtagcagtttcgag
gtgtatactaaaacaatgacggacttcttaattggacagttgagcagaaaggaaatgaag
tcgatgctgttaactttcgctggaaaatcaaattttgataaactacacaattcaatcatt
tttcatattctcaaattgatgcaaaaaaataatgatacctttagtgctctacatcattta
ccttggtttaaacggaagaaagtcgataatagtttatttttacataaaaaaattagttcg
cagaatgcacaggttcgattaatcaagcgaatagtaatgtctttaagttataaagaccgg
gctaggatcaaaactgctttaaaagaaaagccagttacaccaagtttgatctcaggattg
ctgctggaaacgagaattgcaaaattacctaaaattcctgtatcccgagacaagctgaat
tcagtatttgtaaatgatattaaagccggctatgttgcacctctagcatgtgaaacactt
gaacttccagattcagaatcgttaaaagaacgaattacagctatttctcttgaaaatggc
ttattgggtggtgtacaaaagggtgtgtctgatattatattggctgggttagaaagccat
ctaaagaacattctaagcagatgcttttctatattaaacaaaaatattcgacaaaaaaat
actgaaaatgatgcggcaggttttaccattaatgaccttaatctagcatggactattgaa
cctcatgcttttgtcgaacagtatccacagaagttaagaatgccgtttttgcttcatgat
agttatactgaagatgaaatttcaatttgtgcagaatcgccaagctacatgcttgcaagc
aatgatgcgcaaagtgataggaattctgttgcttcccttttagatgaagtgctttcataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (14)   
   KEGG ORTHOLOGY (1)   
   RefGene (5)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (3)   
   OC (1)   
   POMBASE (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (23)   

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