KEGG   Schizosaccharomyces pombe (fission yeast): SPCC1840.10
Entry
SPCC1840.10       CDS       T00076                                 
Symbol
lsm8
Name
(RefSeq) putative U6 snRNP-associated protein Lsm8
  KO
K12627  U6 snRNA-associated Sm-like protein LSm8
Organism
spo  Schizosaccharomyces pombe (fission yeast)
Pathway
spo03018  RNA degradation
spo03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:spo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    SPCC1840.10 (lsm8)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SPCC1840.10 (lsm8)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:spo03019]
    SPCC1840.10 (lsm8)
   03041 Spliceosome [BR:spo03041]
    SPCC1840.10 (lsm8)
Messenger RNA biogenesis [BR:spo03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     SPCC1840.10 (lsm8)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     SPCC1840.10 (lsm8)
Spliceosome [BR:spo03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    SPCC1840.10 (lsm8)
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 2539322
NCBI-ProteinID: NP_588509
PomBase: SPCC1840.10
Ensembl: SPCC1840.10
UniProt: O74483
Structure
Position
III:2277890..>2278303
AA seq 94 aa
MSLADFMEQRVQVITNDGRVVLGSLKGFDHTTNLILSDSFERIISMDQDMETIPLGVYLL
RGENVAMVGLVNEELDSEIEWTKIRGEAIPDVVH
NT seq 285 nt   +upstreamnt  +downstreamnt
atgagtcttgctgattttatggaacaaagggttcaagtcattacaaacgatggtcgcgtt
gtgctaggttccctgaagggattcgatcacacgaccaatcttatactttcagactcattt
gaaagaattattagcatggatcaagacatggaaacaattcctttaggcgtttatttatta
cgtggagaaaatgtagcaatggttggattagtgaatgaggaattagattcagaaatagaa
tggaccaaaattcgaggtgaagcaatacctgacgttgtgcattaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (10)   
   KEGG ORTHOLOGY (1)   
   RefGene (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (3)   
   OC (1)   
   POMBASE (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
3D Structure (2)   
   PDB (2)   
Protein domain (1)   
   Pfam (1)   
All databases (23)   

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