KEGG   Schizosaccharomyces pombe (fission yeast): SPCC5E4.06
Entry
SPCC5E4.06        CDS       T00076                                 
Symbol
smc6
Name
(RefSeq) Smc5-6 complex SMC subunit Smc6
  KO
K22804  structural maintenance of chromosomes protein 6
Organism
spo  Schizosaccharomyces pombe (fission yeast)
Brite
KEGG Orthology (KO) [BR:spo00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:spo03400]
    SPCC5E4.06 (smc6)
DNA repair and recombination proteins [BR:spo03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    SMC5-SMC6 complex
     SPCC5E4.06 (smc6)
SSDB
Motif
Pfam: SMC_N AAA_23 AAA_15 AAA_29 AAA_21 DUF5426 Ploopntkinase3 ABC_tran
Other DBs
NCBI-GeneID: 2539020
NCBI-ProteinID: NP_587906
PomBase: SPCC5E4.06
Ensembl: SPCC5E4.06
UniProt: P53692
Structure
Position
III:652648..656420
AA seq 1140 aa
MTTELTNVSLEEAITEKTSENRRKRDSDVLQTEEVDLSNVKRIRASRNQDNRPERQSRLQ
RSSSLIEQVRGNEDGENDVLNQTRETNSNFDNRVGVIECIHLVNFMCHDSLKINFGPRIN
FVIGHNGSGKSAILTGLTICLGAKASNTNRAPNMKSLVKQGKNYARISVTISNRGFEAYQ
PEIYGKSITIERTIRREGSSEYRLRSFNGTVISTKRDELDNICDHMGLQIDNPMNILTQD
TARQFLGNSSPKEKYQLFMKGIQLKQLEENYSLIEQSLINTKNVLGNKKTGVSYLAKKEE
EYKLLWEQSRETENLHNLLEQKKGEMVWAQVVEVEKELLLAEKEFQHAEVKLSEAKENLE
SIVTNQSDIDGKISSKEEVIGRAKGETDTTKSKFEDIVKTFDGYRSEMNDVDIQKRDIQN
SINAAKSCLDVYREQLNTERARENNLGGSQIEKRANESNNLQREIADLSEQIVELESKRN
DLHSALLEMGGNLTSLLTKKDSIANKISDQSEHLKVLEDVQRDKVSAFGKNMPQLLKLIT
RETRFQHPPKGPMGKYMTVKEQKWHLIIERILGNVINGFIVRSHHDQLILKELMRQSNCH
ATVVVGKYDPFDYSSGEPDSQYPTVLKIIKFDDDEVLHTLINHLGIEKMLLIEDRREAEA
YMKRGIANVTQCYALDPRNRGYGFRIVSTQRSSGISKVTPWNRPPRIGFSSSTSIEAEKK
ILDDLKKQYNFASNQLNEAKIEQAKFKRDEQLLVEKIEGIKKRILLKRREVNSLESQELS
VLDTEKIQTLERRISETEKELESYAGQLQDAKNEEHRIRDNQRPVIEEIRIYREKIQTET
QRLSSLQTELSRLRDEKRNSEVDIERHRQTVESCTNILREKEAKKVQCAQVVADYTAKAN
TRCERVPVQLSPAELDNEIERLQMQIAEWRNRTGVSVEQAAEDYLNAKEKHDQAKVLVAR
LTQLLQALEETLRRRNEMWTKFRKLITLRTKELFELYLSQRNFTGKLVIKHQEEFLEPRV
YPANRNLATAHNRHEKSKVSVQGLSGGEKSFATICMLLSIWEAMSCPLRCLDEFDVFMDA
VNRLVSIKMMVDSAKDSSDKQFIFITPQDMGQIGLDKDVVVFRLSDPVVSSSALPPSTAP
NT seq 3423 nt   +upstreamnt  +downstreamnt
atgactacagagcttactaatgtatctttggaagaagctatcacggaaaaaacaagcgaa
aatagaagaaagagagattcagacgttcttcaaactgaagaagtggatttgtcaaatgtg
aaaagaattcgggcttctcgaaatcaagataatagacccgaaaggcaatctcgacttcag
cgatcatcttcattgattgagcaagttagaggtaatgaagacggagaaaatgatgtcctc
aatcagaccagagagacaaattcaaattttgataaccgcgtgggagtcattgagtgtatc
catttggtgaattttatgtgtcatgactccttgaagattaattttggacctcgtatcaac
tttgtcattggtcataatggtagcggaaaaagtgctatacttacaggattgactatttgc
cttggagctaaagcctcaaatactaatcgcgctccaaacatgaaaagtcttgtaaagcag
ggaaagaattatgcccgaatctctgttacgattagtaaccgtgggtttgaagcataccaa
cccgaaatatatggaaaatctattacaattgagcgtactattcgaagagaaggatccagc
gaatatagattgcgttctttcaatggaacggttatttcaaccaaacgcgatgaactagac
aatatctgcgaccatatgggtttacaaattgacaatcctatgaacatccttacgcaggat
acagcacgtcagttcctgggaaattcaagtccaaaagagaaatatcagctctttatgaaa
ggaattcagctgaaacagctcgaagaaaattactctttaattgaacaaagcttaattaat
actaagaatgttttaggaaataagaaaactggggtctcttatttagcaaagaaggaagaa
gaatataaacttctgtgggaacaatctcgtgaaactgaaaaccttcataacttattagag
caaaaaaagggggaaatggtgtgggctcaagtggttgaagttgaaaaagagcttctgctt
gcggagaaggagtttcaacatgctgaagttaaactttcagaggccaaggaaaatttagag
tcaatagttaccaatcagtctgatattgatggaaagatatcttcaaaagaagaagtgatt
gggagagctaaaggtgaaactgacactacaaagtctaaatttgaagatattgtgaaaaca
tttgatgggtatcgttcagaaatgaatgatgttgatatacagaagcgtgatatacaaaac
agtatcaatgctgccaagagttgcttggatgtgtatcgtgaacaactgaacactgaaaga
gctcgagaaaacaatttgggaggttctcaaattgaaaaaagagcaaacgaatcaaataat
ttgcaacgtgagatagcagatttaagtgaacaaattgttgagcttgaatctaaaaggaat
gacttgcattctgctcttttagaaatgggcggcaatttaaccagcttgttgacaaaaaaa
gactcaattgccaacaaaatctcagatcaaagtgaacatttaaaagtattagaagatgtc
caaagagataaagtttctgcatttggaaagaatatgccgcaacttcttaaactcatcact
cgggaaacaagatttcagcaccctcccaagggacccatgggaaagtatatgacagtgaaa
gagcaaaaatggcatttaattattgaaaggatattgggaaatgttatcaatggttttata
gttcgtagtcatcatgaccaattgatccttaaagagctgatgaggcaaagcaattgtcat
gctacagttgtagttggaaaatacgatccttttgactattcttctggtgaacctgattct
caatatcctacggtgctcaagattattaagtttgatgatgatgaagttctacatacgctg
attaatcatttgggaattgaaaagatgttattgattgaagaccgacgtgaagcagaagct
tatatgaaaaggggcattgctaatgttacccaatgttatgctctcgatcctagaaaccgt
ggatatgggtttcgaattgtcagtacacaacgatcttcaggtatatcaaaggtaacgcct
tggaatagacctcctcgcattggattttctagctcgacgagtatagaggcagaaaaaaaa
attttggatgatttaaagaagcaatacaattttgctagtaatcagctaaacgaggccaaa
atcgagcaagctaaatttaaaagagatgaacaactgttagtcgagaaaatagaagggata
aaaaagaggatccttttgaaacgtagggaggtaaactcacttgaatcccaggaactttct
gtgctagataccgagaagattcaaacccttgaaaggcgcatttctgagactgaaaaagag
ctcgaaagttatgcaggacagttgcaggacgcaaaaaatgaagaacatcgaataagggac
aatcaacgcccggtaattgaggaaatcagaatttatagggagaagatacaaacagagacg
caaaggctctcatccttgcaaaccgaactcagtcggctacgtgatgagaaaaggaattct
gaagtggatattgaaaggcatcgacagacggttgaatcctgtaccaatattttgcgtgaa
aaggaagctaagaaagttcagtgtgctcaggttgtggctgattacacagcaaaggctaat
actcgctgtgaaagggttcctgtacagcttagtccggctgagctcgataacgaaattgaa
agactgcaaatgcaaatagctgaatggagaaatcgcacaggtgtttcggtggaacaagcg
gctgaagactatttaaatgcaaaggaaaaacatgaccaagccaaagttttagttgctaga
ctcacgcaactattgcaagctttagaagagacgttacgaaggcgtaatgaaatgtggacc
aaatttcgcaagctaattactctgcgaacgaaagaactttttgaattatacctcagccag
agaaattttactggaaaactggtaattaaacaccaagaggagtttttggaacctagagtt
tacccggcgaatcgtaatttagcaaccgctcacaatcgccatgagaagtctaaagtcagc
gttcaaggattatcagggggtgaaaaatcttttgcaacgatttgtatgctgttgtcaatt
tgggaggcaatgagttgtccgctccgctgtcttgatgaatttgatgtgtttatggacgct
gttaatagactagtcagtattaaaatgatggtagattctgcaaaggattcttcagataag
caatttatttttattacacctcaggacatgggtcaaattggtttggacaaagacgttgtt
gtttttcgtcttagcgatcctgtcgtttcctcttcagcacttcctccctctacggcgcca
tga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (36)   
   KEGG ORTHOLOGY (1)   
   RefGene (27)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (3)   
   OC (1)   
   POMBASE (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
3D Structure (1)   
   PDB (1)   
Protein domain (8)   
   Pfam (8)   
All databases (52)   

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