KEGG   Spongiibacter sp. IMCC21906: IMCC21906_00608
Entry
IMCC21906_00608   CDS       T03945                                 
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
spoi  Spongiibacter sp. IMCC21906
Pathway
spoi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:spoi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    IMCC21906_00608
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:spoi03021]
    IMCC21906_00608
   03019 Messenger RNA biogenesis [BR:spoi03019]
    IMCC21906_00608
Transcription machinery [BR:spoi03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     IMCC21906_00608
Messenger RNA biogenesis [BR:spoi03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     IMCC21906_00608
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB AAA_25 AAA_22 NACHT Mor AAA
Other DBs
NCBI-ProteinID: AKH68301
UniProt: A0A0F7M040
Position
complement(652522..653790)
AA seq 422 aa
MNLTDLKTKPAQELLDIAKEIGLDNIARSRKQDIIFSILKRHAKSGEDIHGDGVLEILQD
GFGFLRSADCSYLAGPDDIYVSPSQIRRFNLRTGDSIAGKIRPPKEGERYFALLKVDEVN
YTRPEQSKNKVLFENLTPLFPNERLTLEQGNGSTEDLTGRIIDLAAPIGKGQRGLIVAPP
KAGKTLMLQNIAQSIIRNNPECYVIVLLIDERPEEVTEMQRSVGAKGAEVVASTFDEPPA
RHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTIVPSSGKVLTGGVDAHALERP
KRFFGAARNIEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNNELHLDRKIAEKRVYPA
INIRRSGTRREELLTGEDELQRMWILRKLLHGMEDTGAIEFLIDKLKDTKTNSEFFDSMK
RK
NT seq 1269 nt   +upstreamnt  +downstreamnt
atgaatcttactgatcttaaaaccaagcctgcccaagaactgctcgatattgccaaagaa
attggcctcgacaacatcgcccgctctcgcaaacaggatattatcttctccatcctgaag
cgccacgccaaaagcggcgaagatattcacggcgacggcgtactagaaattctccaagac
ggttttggttttctgcgctctgcagactgctcatacctggctggcccagatgacatctat
gtgtcgcccagccaaatccgccgctttaatctgcgcactggcgacagcatcgctggcaaa
attcgcccccccaaagaaggcgaacgctactttgccctgctcaaagtagacgaggttaac
tacaccagacctgagcaatccaagaataaagtcctgtttgaaaacctgaccccattgttt
cccaatgagcgcctgacgctggaacagggtaatggctcaacagaagatttgaccggccgg
atcatcgacttggcggcacccatcggtaagggccaacgcggcttgattgtagcgccaccc
aaagccggtaaaaccttaatgctgcagaacatcgcccaaagcattattcgcaacaacccc
gaatgctacgttatcgtgctactgattgacgagcgcccagaagaagtcaccgagatgcaa
cgctcggtgggtgcaaaaggggccgaagtggttgcctcaaccttcgacgaaccccctgcc
cgtcacgtgcaagtggccgagatggtaatcgaaaaagccaagcgcctggttgagcacaaa
aaagatgtcgtgattctgctcgactccattacccgcctggcccgagcttacaatacgatt
gttcctagctccggcaaggtactcactggcggtgttgacgctcacgcgctggagcgcccc
aagcgcttcttcggtgcggcacggaatatcgaagaaggcggcagcctgaccattatcgct
accgcgctgatcgataccggttcgaaaatggacgaagtgatctacgaagaatttaaaggc
accggcaacaacgaactgcatctcgaccgcaagatcgccgagaagcgcgtttaccctgcc
atcaatattcgtcgctcgggcacccgtcgtgaagaactcctcaccggcgaagacgaactg
caacggatgtggattttgcgcaaactgctgcacggcatggaagacaccggcgcgatcgaa
ttcctgatcgacaagctgaaggacaccaagaccaacagcgaattcttcgactcaatgaaa
aggaaataa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (34)   
   KEGG ORTHOLOGY (1)   
   RefGene (31)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (49)   

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