KEGG   Sphingobacterium psychroaquaticum: E2P86_12090
Entry
E2P86_12090       CDS       T05967                                 
Name
(GenBank) DEAD/DEAH box helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:3.6.4.13]
Organism
spsc  Sphingobacterium psychroaquaticum
Pathway
spsc03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:spsc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    E2P86_12090
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:spsc03019]
    E2P86_12090
   03009 Ribosome biogenesis [BR:spsc03009]
    E2P86_12090
Messenger RNA biogenesis [BR:spsc03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     E2P86_12090
Ribosome biogenesis [BR:spsc03009]
 Prokaryotic type
  rRNA helicases
   E2P86_12090
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII AAA_22 SNF2-rel_dom P-loop_SecA SWI2_SNF2 Helicase_C_2
Other DBs
NCBI-ProteinID: QBQ41854
UniProt: A0A1X7I775
Position
2839056..2840360
AA seq 434 aa
MTIQQILDRMQIAELNDMQKEVQERYNPNADFILHSPTGSGKTLAFTMLLDKHLKQDKPG
VQALILVPTRELALQIEQVVKKVLVGYKVTCCYGGNDTKVERNKLREAPAILIGTPGRIL
YHMDRNHFDPQTISALVLDEFDKSLEFGFIGQMTSIVERLTNLTNRILTSATTMTDIPTF
TGIGEYVMVNYLDNSAAAPKLSIKKVIAPAQHKLKALFKLLCKNGPKKTLIFCNHREAAN
HISELLEDREIIHDLFHGGLEQVDREIALLKFRNNSNRILITTDLAARGLDIPEVDTIIH
YQLPYKEDAFIHRNGRTARMQSSGEVYVILKPEEDYPYIDKDCPEELLDGEYDLPPNSPF
ATLYITGGKKDKINKIDIVGFILNLEDVQKDDLGIIEVKEKEAYVAVKRSIALSIIKQAN
NQKIKGKKVRVGRT
NT seq 1305 nt   +upstreamnt  +downstreamnt
atgacaatacagcagatattagacaggatgcagatcgccgaattgaacgacatgcaaaaa
gaagttcaagaacggtataatccaaatgctgactttatattacactctcctacaggctcc
ggaaagacactcgcatttacgatgttgttggacaaacaccttaaacaagacaaaccaggt
gttcaagctctaattttggttcccactcgagaacttgccttacaaattgaacaagtagta
aaaaaagttcttgtaggctataaagtaacctgttgttatggcggtaatgacaccaaggtg
gaacgaaacaaactgcgtgaagcgcctgccatcctaatcggaacacctggtcgtatcctc
taccatatggatcgcaatcacttcgacccccagaccatctcggctttggtgctcgatgaa
tttgataaatcattggaattcggttttatcggacagatgacatcaattgtagaacgtctg
accaacctgaccaataggatcctgacatctgccaccacgatgacagatattccgacgttc
acaggaataggcgaatatgtcatggtaaattacttggacaacagtgcagccgcaccgaag
ctcagtatcaagaaagttattgcaccggcgcaacacaagttaaaagctttattcaagctg
ctctgcaaaaatggtccaaagaaaacattaatcttttgtaaccaccgtgaagcggctaat
catatcagtgagctactggaagaccgtgaaatcatacacgaccttttccatggtggcctc
gaacaagtggatcgcgaaatagcacttttaaaattcagaaacaattcgaatcgtatatta
atcaccacggacctcgcagctcgcggcctcgatatcccggaagtagacactattatccat
tatcaacttccttataaagaggatgcttttattcatcgtaatggtcgtacagcacgtatg
caatcaagtggtgaagtttacgtaatcctgaaacctgaagaggattatccttatattgat
aaggactgtccggaagaattgttggatggtgaatatgacctgccaccaaactctcctttc
gctacactttacattactggtggtaagaaagataaaatcaacaaaatagacattgtaggc
tttatcctcaacctagaagatgttcaaaaagatgatttagggatcattgaagtcaaggag
aaagaagcctatgttgctgtaaagcgttctattgctttaagtatcattaaacaagccaat
aatcaaaaaatcaaaggcaagaaagtacgcgttggacggacgtag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (18)   

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