KEGG   Strongylocentrotus purpuratus (purple sea urchin): 105446682
Entry
105446682         CDS       T01019                                 
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
spu  Strongylocentrotus purpuratus (purple sea urchin)
Pathway
spu03018  RNA degradation
spu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:spu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    105446682
  09123 Folding, sorting and degradation
   03018 RNA degradation
    105446682
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:spu03019]
    105446682
   03041 Spliceosome [BR:spu03041]
    105446682
Messenger RNA biogenesis [BR:spu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     105446682
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     105446682
Spliceosome [BR:spu03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    105446682
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 105446682
NCBI-ProteinID: XP_030852295
Position
Unknown
AA seq 132 aa
MLPLSLLRTAQNHPMLVELKNGETYNGHLVACDNWMNINLREVICTSRDGDRFWRMPECY
IRGSTIKYLRIPDEVIDMVKEEVVSKGRGRGGGGRGRGRGGPGRGGAFGRGGGRGGGRGD
GKRGGRGGPPKS
NT seq 399 nt   +upstreamnt  +downstreamnt
atgttgcctctatctctgcttagaaccgctcagaaccaccctatgctggtggaactgaag
aacggggagacatacaatggccatcttgttgcatgtgataactggatgaatatcaatctc
agagaagtcatctgcacatcaagggacggtgaccggttctggaggatgcccgagtgctac
atcaggggaagcaccatcaaatacctcaggataccggacgaggtcatagacatggtcaag
gaagaggtcgtatccaaaggtcgcggccgtggaggtggaggtcgcggaaggggtcgtggt
ggtccaggtagaggaggtgcatttggtcgaggtggtggtcgaggaggaggacgaggcgat
ggcaagaggggaggaagaggaggaccaccaaagtcatag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (78)   
   KEGG ORTHOLOGY (1)   
   RefGene (74)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (87)   

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