KEGG   Strongylocentrotus purpuratus (purple sea urchin): 580516
Entry
580516            CDS       T01019                                 
Name
(RefSeq) poly(A)-specific ribonuclease PARN
  KO
K01148  poly(A)-specific ribonuclease [EC:3.1.13.4]
Organism
spu  Strongylocentrotus purpuratus (purple sea urchin)
Pathway
spu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:spu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    580516
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:spu03019]
    580516
Enzymes [BR:spu01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     580516
Messenger RNA biogenesis [BR:spu03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     580516
SSDB
Motif
Pfam: CAF1 RNA_bind R3H
Other DBs
NCBI-GeneID: 580516
NCBI-ProteinID: XP_030840977
Position
Unknown
AA seq 634 aa
MEVTIDNFNEALKLMSSALDHCSFVAIDGEFTGLHSGSSPGVFDTPAERYQHLKENCCDF
LLIQLGVCIFKYEKQKKGYGYVAYPFNFYVFPRPSTRAAPDQRFLCQSSSIDFLVSHGFD
FNKVFYKGIGYLTAVDNMRVKEMVQQRHAQYEGNASLLSDCSPNFNSPSTAKRPVEIPEE
HKPFIDDVSKRVGAFAAGTADELKLEPCTGYQRKLVYQTIKSRYPSGLHLDTHTTEDKKG
RFIVVRRVTEEEKKKLAQDKLQAELDEVDEASGICRVMKMISESGKVVVGHNMMLDVIHM
MHQFTGPLPDTLLEFKSMVGCVFSRLLDTKVMANTQPFKELFPMTGLNDLMSKCDEEPFR
RPHIVIPPSGFVDYTANQKFHEAAYDAYVTGVCFATMANYIGTFLTPPKPRVSPTSNLIE
PFLNKMFLHRIADMPYLNLDGPDLQPSRDHIFHVRFPSEWKSTDLYDLFTPFGNIMISWI
DDKSAMVGLMKKDRASQVRRTLEKNPLYQVTSYADYKKSQFMAGDFVPFPAFQEAPSSAE
AKTPGSPRGKKRAMVDESPDKLANFDDPEVASFMSSTAKKLKQMDPNATPFVSRKSVTPP
IPSSEGKKLDRASSEDNEAAAKEPTKLFEESASW
NT seq 1905 nt   +upstreamnt  +downstreamnt
atggaagtgaccattgataatttcaatgaggcattgaagttgatgagctcggcattagat
cactgctcattcgtagccatcgatggggagttcacaggactccacagcgggtcgagtccc
ggcgtctttgatactccagcagagaggtaccaacatctcaaagagaactgttgtgacttt
ctgttgattcagcttggtgtctgcatattcaagtatgagaaacagaagaaagggtatggt
tatgtggcctatcctttcaacttctacgtctttccaagaccgtccacgcgtgcggctcca
gaccagagattcctatgtcagagttccagtatagattttctggtgtcacacggctttgat
ttcaacaaagtgttctataaaggaattggttacttgacggcagtagacaacatgagagtg
aaggagatggtccagcagagacacgcccagtacgaggggaacgccagtctgctctcagac
tgcagtcctaacttcaactctccctcgaccgccaagagaccggtcgagatacctgaagaa
cacaagccatttatagacgatgtcagcaagagagttggagcgtttgcagctggaactgca
gatgaactcaaacttgaaccatgcacagggtaccaaaggaaactagtataccaaacaatt
aaatcaaggtatccatcaggtcttcacttagacacacacacaactgaagacaaaaaaggt
agattcatagtggtgaggagagtaacggaagaagagaaaaagaagttagcccaagataaa
ctccaggctgaattggatgaagtagacgaggcgtcagggatctgcagggtgatgaagatg
atctctgagtcgggcaaggtcgttgtaggtcacaacatgatgctagatgtcattcacatg
atgcaccaattcacaggcccactccccgataccctgcttgaattcaagtcgatggttggt
tgtgtcttctcaaggttacttgacaccaaggtcatggccaatacgcaacccttcaaggaa
ctctttccgatgacaggcctgaatgatctaatgagcaagtgtgatgaggaacctttcaga
agaccacatatagtgataccgccctcaggcttcgtagactacacagctaatcagaagttc
cacgaggctgcgtacgacgcctatgtgactggtgtctgcttcgccaccatggccaactat
attggcaccttcttgaccccgcccaagcccagagtgtccccgacgtcaaacctcatcgaa
ccattcctcaataagatgtttctacacagaattgcagacatgccatacttgaatttagac
ggaccagatttgcaaccttccagagatcacatcttccatgtgcgctttccgtcggaatgg
aaatcaactgacctctatgacctcttcactccctttggcaacatcatgatcagctggatt
gacgacaagtccgctatggttggcttgatgaagaaagatagagcctcacaggttcgacgg
accctagagaagaaccctctctaccaggtcacatcctacgcggactacaagaaatctcag
ttcatggctggagactttgtccccttcccagctttccaagaagccccctcctccgccgaa
gcgaagacacccgggagccctcgtggaaagaagcgtgccatggttgacgagtccccggat
aaattggccaatttcgacgacccagaggtcgctagctttatgtcaagtacggccaagaag
ctcaaacagatggatccaaatgctaccccctttgtctcgagaaagagtgtcactccacct
ataccatcttcagaaggcaagaaactagatagagcaagcagcgaggataatgaggctgca
gccaaggaacctactaagttgtttgaagaatccgccagttggtag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (17)   
   KEGG ORTHOLOGY (1)   
   RefGene (13)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (7)   
   RefSeq(nuc) (1)   
   GenBank (3)   
   EMBL (3)   
Protein domain (3)   
   Pfam (3)   
All databases (34)   

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