KEGG   Sphingobium sp. YG1: YGS_C1P1669
Entry
YGS_C1P1669       CDS       T05858                                 
Name
(GenBank) ATP-dependent RNA helicase DeaD
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
spyg  Sphingobium sp. YG1
Pathway
spyg03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:spyg00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    YGS_C1P1669
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:spyg03019]
    YGS_C1P1669
   03009 Ribosome biogenesis [BR:spyg03009]
    YGS_C1P1669
Enzymes [BR:spyg01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     YGS_C1P1669
Messenger RNA biogenesis [BR:spyg03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     YGS_C1P1669
Ribosome biogenesis [BR:spyg03009]
 Prokaryotic type
  rRNA helicases
   YGS_C1P1669
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII CMS1
Other DBs
NCBI-ProteinID: BBD00414
UniProt: A0A2Z6AEN6
Position
1:1794980..1796716
AA seq 578 aa
MTTKGYEALTPVQSEVTQEEAHGRDLIVSAQTGSGKTVAFGLAMAGELLGDADRLPPPAW
PLALVIAPTRELALQVSRELEWLYAGARARIATCVGGMDAAKERRALSQGAHIVVGTPGR
LRDHLERGALDLSALKTAVLDEADEMLDMGFREDLEGILDATGEGRRTLLFSATMPKPIV
ALARRYQKDALQIATISAERGHGDISYQAMTVAPADIENAVVNLLRFHEAETAILFCATR
DNVRHLHASLTERGFAAVALSGEHSQNERNHALQALRDKRARVCVATDVAARGIDLPTLT
LVVHVELPRDAETMQHRSGRTGRAGKKGTAVLIVPYPRRRRVESMLKGAKIPVEWTTAPS
KEQIAAQDAERLRARLLEPMELEESDWALGGELLEAKSAKEIAAMLVRSARAAMPAPEEL
LDASEAPARRDGPRPGFEDTQWFRMDIGRRQNADPRWILPLICRRGHVSRGDIGAIRITT
NETMFEIPRAIASKFIASVKRTGEAGDEGADVTFEPTEGAPREEARENRKQLRPSNDSRP
NRSGPPRGGPGGGRPHSPRPFKGAGAGGPRKGPPRSRG
NT seq 1737 nt   +upstreamnt  +downstreamnt
ttgacgaccaagggctatgaggcgctgacccccgtccagtccgaagtgacgcaggaagaa
gcgcatggccgcgacctgatcgtgtccgcgcagaccggttcgggcaagaccgtcgccttc
ggcttggccatggccggcgaattgctgggcgacgccgatcgcctgcccccgcccgcctgg
ccgctggcgctggtaatcgcgccgacgcgcgaactggcgttgcaggtcagccgcgagctg
gaatggctgtacgccggcgcccgcgcccgcatcgccacctgcgtcggcggcatggacgcc
gccaaggaacgccgtgccctgtcgcagggcgcgcatatcgtggtcggcacgccgggccgt
ctgcgcgaccatctggaacgcggcgcgctcgacctgtcggcgctcaagaccgccgtgctc
gacgaagcggacgaaatgctcgacatgggcttccgcgaggatctggaaggcattctcgac
gcgaccggcgaaggccgccgcacgctgctgttttcggccaccatgcccaagccgatcgtg
gcgctggcccgccgctaccagaaggacgcgctgcaaatcgcgaccatctcggccgagcgc
ggtcatggcgacatcagctatcaggcgatgaccgtcgcgcccgccgacatcgaaaatgcg
gtggtgaacctgctgcgtttccatgaagcggaaacggcgatcctgttctgcgccacgcgc
gacaatgtgcgtcacctgcatgccagcctgaccgagcgtggctttgccgccgtggcgctg
tcgggcgagcatagccagaatgagcgcaaccatgcgttgcaggcgctgcgcgacaagcgc
gcccgtgtctgcgtggcgaccgacgtggccgcacgtggcatcgatctgcccacgctgacg
ctggtggtccatgtggagctgccccgcgacgcggaaaccatgcagcatcgctcgggccgt
accggccgtgcgggcaagaagggcaccgccgtgctcatcgtgccctatccgcgccgccgc
cgcgtcgaatccatgctgaagggggcgaagatcccggtcgaatggacgacggcgccgagc
aaggagcagatcgccgcgcaggatgccgaacggctgcgcgcgcgcctgctggagccgatg
gagctggaagagtccgactgggcgctgggtggcgaactgctggaagccaagagcgccaag
gagatcgccgcgatgctggtgcgcagcgcccgtgcggcgatgcctgcgcccgaagagctg
ctggacgccagcgaggcgcctgcgcgtcgtgacgggccgcgtccgggctttgaggacacg
cagtggttccgcatggacatcggccgtcgccagaatgccgatccgcgctggatcctcccg
ctgatctgccgccgtggccatgtgtcgcgtggcgacatcggcgcgatccgcatcaccacc
aacgagacgatgttcgaaattccgcgcgccatcgcgtcgaagttcatcgcatcggtcaag
cgcaccggcgaagcgggtgacgagggtgcggacgtcacgttcgagccgaccgaaggcgca
ccgcgcgaggaagcccgcgagaaccgcaagcagctgcgcccgtccaacgattcgcgtccc
aaccgcagcggcccgccgcgtggcggaccgggcggcggtcgtccgcacagcccgcgcccg
ttcaagggcgccggcgccggtggcccgcgcaagggcccgccccgctcgcgcggttga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (14)   

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