KEGG   Sphingosinithalassobacter tenebrarum: G5C33_08145
Entry
G5C33_08145       CDS       T06464                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
spzr  Sphingosinithalassobacter tenebrarum
Pathway
spzr03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:spzr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    G5C33_08145 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:spzr03021]
    G5C33_08145 (rpoC)
   03400 DNA repair and recombination proteins [BR:spzr03400]
    G5C33_08145 (rpoC)
Enzymes [BR:spzr01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     G5C33_08145 (rpoC)
Transcription machinery [BR:spzr03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     G5C33_08145 (rpoC)
DNA repair and recombination proteins [BR:spzr03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      G5C33_08145 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Biotin_lipoyl_2 Peptidase_M23 RPOC_hybrid
Other DBs
NCBI-ProteinID: QIG79763
UniProt: A0A6G6Y592
Position
complement(1659877..1664163)
AA seq 1428 aa
MNELTNFANPVAKPETFDQIQIGIASPDRIRSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRMKYKGIVCEKCGVEVTVSKVRRERMGHIELAAPVAHIWFLKSL
PSRIGLLLDMQLKQLERVLYFESYIVTEPGLTPLEKFQLLTEDELLDAQDEYGEDAFSAG
IGAEAVKVMLMDLDLEGEREDLLKELAETKSELKPKKIIKRLKVVESFIESGNRPEWMIL
EVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIVRNEKRML
QESVDALFDNGRRGRTITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTGP
ELKLHQCGLPKKMALELFKPFIYARLDAKGLSMTLKQAKKWVEKERKEVWDILDEVIREH
PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDMVLGLYYLSMEKENEPGEGMILGDMEEVHQALFN
GAVTLHTKITTRVPQTDEEGNEYMQRVETTPGRMLIGEKLPKSHRVPFETINRLLTKKEI
GDVIDTVYRHTGQKETVLFADGIMTLGFQHAFRAGISFGMDDMIIPAAKEGLVEETRALV
KDYEQQYQDGLITQQEKYNKVIDAWSRCGDQVAGAMMDEIKAVKKFEDGPDAGREKPINS
IYMMAHSGARGSQAQIKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARK
GLADTALKTANSGYLTRRLVDVSQDCVIMEDDCGTERALEMKAIVQGGSTIASLGERILG
RTTAEDVVDSKTGEVVIPSGTLLDEAMVAQIEAVGVQGMKIRSPLVCEAKIGVCGKCYGR
DLARGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQLNEQSNLEAPVDGKVEFRD
VRMIMDQRGRRVVLSRSAELAILDTEGRELAVHKIPYGAHVLFDDGHIVTAGDRMAEWDP
FTAPVITENPGTVKYQDLIDGKTLTEQADEATGITQRVVTDYRGSARSKEDLRPRLTLTG
DSAEEAGRYMLQPGAVISVEDGATVQAGDVLARVARESAKTRDITGGLPRVAELFEARKP
KENAIIAKVSGRVVFGKDYKAKRKIGIQPEDGGDVVEYLVPKSKVIDVQEGDYVKRGDNL
IGGSPDPHDILEVLGIEALAEYLVSEIQEVYRLQGVKINDKHIEVIVRQMLQKVEITEAG
DTTLLPGEQVDRDEMDKTNAKLAPGQMPAQGKPVLLGITKASLQTRSFISAASFQETTRV
LTEAAVQGKQDTLIGLKENVIVGRLIPAGTGAGMNRMRIAASSRDAALRAQQRKLQEALI
APESAAAEHEAELAQDPNDARVTSDALEKVETSGHGTDEDAGDYLNKE
NT seq 4287 nt   +upstreamnt  +downstreamnt
atgaacgaactgaccaatttcgcgaacccggtggccaagccggaaaccttcgaccagatc
cagatcggcatcgcgtcgcctgaccgcatccgttcctggtcgttcggcgagatcaagaag
cccgagacgatcaactatcgcacgttcaagccggaacgtgacggcctgttctgcgcgcgc
atcttcggtccgatcaaggattacgaatgcctgtgcggcaagtacaagcgcatgaagtat
aagggcatcgtctgcgaaaaatgcggtgtcgaagtcaccgtgtcgaaggtccgccgcgaa
cgcatgggccatatcgaactcgcagcgcctgtcgcgcacatctggtttttgaagtcgctg
ccgtcgcgcatcggcctgctgctcgacatgcagctcaagcagctcgagcgcgtgctgtat
tttgaaagctacatcgtcaccgagcccggcctgaccccgctcgaaaagttccagctcctc
accgaggacgaactgctcgacgcgcaggacgaatatggtgaagacgccttctccgccggc
atcggcgccgaggcggtcaaggtcatgctcatggacctcgacctcgaaggcgagcgtgag
gacctgctcaaggaactggccgagaccaagtccgagctgaagcccaagaagatcatcaag
cggctcaaggtcgtcgaaagcttcatcgaatcgggcaatcgccccgaatggatgatcctc
gaagtcgtgccggtcattccgcccgaactgcgcccgctcgtcccgctggacggtggccgt
ttcgcgacgtcggacctcaacgacctctatcgccgcgtgatcaaccgcaacaaccgcctc
aagcggctgatggagctgcgcgcgccggacatcatcgtccgcaacgaaaagcgcatgctg
caggaatcggtcgacgcactgttcgacaatggccgtcgcggccgcaccatcaccggtgcc
aacaagcgtccgctcaagtcgctgtcagacatgctcaagggcaagcagggccgcttccgt
cagaaccttctgggtaagcgcgtcgactattcgggccgttcggtcatcgtgaccggcccc
gagctcaagctgcaccagtgcggcctgccgaagaagatggcgctcgagctgttcaagccg
ttcatctacgcccgtctcgatgccaagggtctctccatgaccctcaagcaggcgaagaaa
tgggtcgagaaggaacgcaaggaagtctgggatatcctcgacgaagtcattcgcgagcac
ccggtgctgctgaaccgcgccccgacgcttcaccgcctcggcatccaggcgttcgagccg
gtgctgatcgaaggcaaggcgatccagctccacccgctcgtctgttcggcgttcaacgcc
gatttcgacggcgaccagatggccgtccacgttccgctgagcctcgaggcgcagctggaa
gcgcgcgtgctgatgatgtcgaccaacaacatcctctcgcccgccaacggcaagccgatc
atcgtgccgtcgcaggacatggtgctgggtctctattacctctcgatggagaaggagaac
gagcccggcgaaggcatgatcctgggcgatatggaggaagtccatcaggcgctgttcaac
ggcgcggtgacgcttcacaccaagatcaccacccgcgtcccgcagacggacgaggaaggc
aatgagtatatgcagcgcgtcgaaacgacgccgggtcgtatgctgatcggtgaaaagctg
cccaaatcgcaccgcgtgccgttcgaaacgatcaaccgccttctcaccaagaaggaaatc
ggcgacgtcatcgacactgtctatcgccacaccggccagaaggagacggtgctgttcgcc
gacggcatcatgacgctgggcttccagcacgcgttccgcgccggcatttcgttcggcatg
gacgacatgatcatccccgccgcgaaggaagggctggtcgaggaaacccgcgcgctggtg
aaggattacgagcagcagtatcaggacggcctgatcacccagcaggaaaagtacaacaag
gtgatcgacgcctggagccgttgcggcgaccaggtggccggcgcgatgatggacgagatc
aaggcggtcaagaagttcgaggatggccccgatgccggccgcgaaaagccgatcaactcg
atctacatgatggcgcattcgggtgcccgtggttcgcaggcgcagatcaagcagcttgcc
ggcatgcgtggcctgatggccaagccgtcgggcgagatcatcgaaaccccgatcatctcg
aacttcaaggaaggcctgaccgttcttgaatatttcaactccacccacggcgcgcgtaag
ggcctggcggacacggcgttgaaaaccgcgaactcgggctatctcacgcgtcgtctggtc
gacgtgtcgcaggactgcgtcatcatggaagatgattgcggcaccgaacgcgcgctggaa
atgaaggcgattgttcagggcggcagcaccatcgcctcgctcggcgagcgtatcctgggc
cgcaccacggctgaggatgtggtcgacagcaagaccggcgaagtggtgatcccgtcgggc
acgttgctcgacgaagcgatggtcgcgcagatcgaggccgttggcgttcagggcatgaag
atccgctcgccgctggtctgcgaagccaagatcggcgtgtgcggcaaatgctatggccgt
gacctcgcccgcggtacgccggtgaatatcggcgaagcggtcggcgtcatcgcggcgcag
tcgatcggggaaccgggcacgcagctgaccatgcgtaccttccacatcggcggcgcggcg
cagctcaacgagcagtcgaacctcgaagcccctgtcgacggcaaggtcgaattccgcgac
gtgcgcatgatcatggatcagcgcggccgccgcgtggttctgtcgcgctcggcagagctg
gcgatcctcgacaccgagggccgcgagctggcggtgcacaagattccgtacggtgcgcat
gtgctgttcgacgatggtcacatcgtgaccgccggcgaccgcatggccgaatgggatccg
ttcactgcgcctgtgatcacggaaaatccgggtacggtgaagtatcaggacctgatcgac
ggcaagacgctgaccgagcaggccgacgaagcgacgggcatcacccagcgcgtcgtcacc
gattaccgtggttccgcccgcagcaaggaagacctgcgtccgcgcctcaccctgacgggc
gacagcgcggaagaagccggccgctacatgctgcagccgggcgcggtgatcagcgtcgag
gatggtgcgacggtccaggccggtgacgtgcttgcccgtgttgcccgcgagtccgcaaag
acccgcgacatcaccggcggtctgccgcgcgtcgccgagctgttcgaagcgcgcaagccc
aaggaaaacgcgatcatcgcgaaggtctcgggccgcgtcgtgttcggcaaggactataag
gccaagcgcaagatcggcatccagccggaggacggcggcgacgtcgtcgaatatctggtg
ccgaagtcgaaggtgatcgacgttcaggaaggcgactatgtcaagcgtggcgacaacctg
atcggcggcagccccgatccgcacgacattctggaagtcctcggcatcgaggcactggcc
gaatatctggtcagcgaaatccaggaagtctatcgactgcagggcgtgaagatcaacgac
aagcacatcgaggtgatcgttcgccagatgctgcaaaaggtcgagatcaccgaagccggc
gacaccacgctgcttccgggcgagcaggtcgatcgcgacgaaatggacaaaaccaacgcc
aagctggctccgggccagatgccggcacagggcaagcccgtgctgctcggcatcaccaag
gcttcgctgcagacgcgttcgttcatctcggcggcgtcgttccaggaaaccacgcgcgtc
ctcaccgaggccgcggtgcagggcaagcaggacacgctgatcggcctcaaggagaatgtc
atcgtcggccgcctcatcccggcgggtaccggcgcgggcatgaaccgcatgcgcatcgcc
gcatcgtcgcgcgacgcggcgctgcgcgcccagcagcgcaagctgcaggaagcgctgatc
gcgcccgaaagcgcggcggccgagcacgaagccgaactggcgcaggatccgaacgacgcg
cgcgtcacttcggatgcgctggaaaaggtggaaacctccggtcacggcaccgacgaagac
gcgggcgattacctcaacaaggaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (18)   

Download RDF
DBGET integrated database retrieval system