KEGG   Salpingoeca rosetta: PTSG_02406
Entry
PTSG_02406        CDS       T04136                                 
Name
(RefSeq) uncharacterized protein
  KO
K00784  ribonuclease Z [EC:3.1.26.11]
Organism
sre  Salpingoeca rosetta
Brite
KEGG Orthology (KO) [BR:sre00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:sre03016]
    PTSG_02406
Enzymes [BR:sre01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.11  tRNase Z
     PTSG_02406
Transfer RNA biogenesis [BR:sre03016]
 Eukaryotic type
  3'processing and CCA adding factors
   3'processing factors
    PTSG_02406
 Prokaryotic type
    PTSG_02406
SSDB
Motif
Pfam: Lactamase_B_4 Lactamase_B_2
Other DBs
NCBI-GeneID: 16077489
NCBI-ProteinID: XP_004996897
UniProt: F2U241
Position
Unknown
AA seq 1004 aa
MQAISTWTRACASACAFAGPRFRAVIPLKRLPKTRALIDAPLHSLSSTTASRPSSTFTMS
AVSYLQIVAGSCDTGPSAFIFTDDRRYLFNTGEGIQRFCMEHKIRLKQVTDIFFTKSSWE
CIGGLPGMLLTMQDMYQVSHPVALHAPPHLSTMLEGTKTFMQHRSSLYREFREYTDPVSE
FDDGRLRMKIFTIHARDQTPALHPHVISALKQQKYMEQAAPPVSQNIGAEFDHHATHEPH
TLPAKKVRLQPKQDQSPGQQQQQQQQQQQPSAGNGHDAARQRTPSPISSRLESASPPPHP
APQLTLVPPTAEETLAAAESTRDTALAYVGSLVNPRPGKFNVQKAKAAGVPKGPLWGQLG
KGNEVTLDDGRVVKPEDVLDPVDPLPHFAIVHIPTRAALEATIARSELFDAFRAMPSSMP
KVVHFTSQALAQTDAYAQLLQQFGPNVTHVFVDPQHNPHATTISSTKLQYMLQTIGPTPF
AMAPVPSTVPELTVPHALPDNCSVVSAQPLYRVFLSKRRDGLLTDATTCLPIVSPEECRE
TVMALPDMQRLLPQQNEHAQAPPPTTAPPTTTTPAKAPPTTTTTATATASGTGGDSLAAL
RPDERVLHFMGTGSAVPSQLRNVTGMLLTRGIWVDSDGATTVNKDVAASMLLDCGEGSLS
QLQRKFGAEHMPAVLRSLRLVHISHMHADHHLGLTRVLARRREAFAAVGVDDPPPVVVVA
PHFLWLFMRYTAHLSCATAVFLDARWTRFAHWQLPRFVPPHVKDAYARAMAGMGLRALAT
PAVKHCFAAYGLVLDFDDGYRFAWSGDTRPCKSMVGAGKGADVLVHEATFEDGLEDQAVQ
KNHSTTSDAVTVAQQMGAKMLILTHFSQRYPQIPVLDAKSREHTAFGFDLMSVVLRRAKE
LTAMTPAIDHMFTALKPEEEEEEGDDDGDIETIGGADGNAKGKGEKKGKDKVKAKVKGNG
KGGGVKVDDVARGRKQQKQKQPKESKQTAAVKEVRTDADQQQAS
NT seq 3015 nt   +upstreamnt  +downstreamnt
atgcaggccatttccacctggacccgtgcgtgtgcatctgcgtgtgcgtttgcaggtcct
cgattccgcgctgtgatcccgctcaagcggctgccgaagacacgcgccctcatcgacgct
ccactgcactcattatcatcaactactgcaagtcgtccaagttccaccttcaccatgagc
gccgtctcctatcttcagattgtcgctgggtcctgtgacactggaccctctgcttttatc
ttcactgatgatcgaaggtatctcttcaacacgggcgaaggcatccagcgcttctgtatg
gagcacaagattcgcctgaagcaagtcacggacatcttcttcacaaagagcagctgggag
tgcatcggcggccttccaggcatgctgctgacaatgcaggacatgtaccaggtgtcgcat
ccagtggccctgcacgccccaccgcacctcagcaccatgcttgagggcaccaagacgttt
atgcagcaccgctccagcctctaccgtgagtttcgcgagtacacagaccccgtctcggag
tttgatgacgggcgcttgcgcatgaaaatcttcacgattcacgcgcgcgaccaaacccca
gcgctgcacccgcacgtcatctctgcgctcaagcagcagaagtacatggagcaagcagcg
ccgcccgtcagccagaacattggcgccgagtttgaccaccacgccacgcacgaaccgcac
accttgcccgccaagaaggttcgtctccaacccaaacaagaccaatcaccaggtcaacag
cagcagcagcagcagcagcagcagcagccgtcagctgggaacggccacgacgcagcacgg
cagcgcacgccatcgcccatttcgtctcgattggagtctgcatcgccaccaccacacccg
gcaccacagctcacgctcgtgccgccaacagcagaggagacgctcgccgctgcggagagc
acgcgcgacacggcgctggcgtacgtgggctcgctcgtcaatccgcggccaggcaagttc
aacgtgcaaaaggccaaggcagcaggcgtgccaaaggggccactctgggggcagcttggc
aagggcaacgaagtgacgctggatgacggacgtgtggtgaagcctgaagatgtgcttgat
cccgtggacccgctcccccattttgccattgtccacatcccaacacgcgcggcactggag
gccaccattgcccgcagcgagctgtttgatgccttccgcgcaatgcccagcagcatgcca
aaggtggtgcatttcacctcgcaggcgctggcgcagacggacgcatatgcgcaactcttg
caacagtttggccccaacgtcacccacgtctttgttgacccgcagcacaacccgcacgcc
accaccatctcctcaacaaagctgcagtacatgctacaaacgattgggccgacaccgttt
gccatggcgcctgttccatccaccgtcccggaactgaccgtgccacacgcgctgccagac
aactgcagcgtggtgtctgcacagccgctgtatcgcgtgtttctctccaagcggcgggac
ggcctcctcacggacgccacaacctgcctacccatcgtctcccctgaagagtgcagagaa
acagtcatggcgctgcctgacatgcaacggctcctgccacaacaaaatgaacatgcacaa
gcaccaccaccaacaacagcaccaccaacgacaacaacacccgcaaaagcaccaccaaca
acgacaacaacagcaacagcaacagcgtccgggacaggtggtgattcactggctgcactc
cgccctgatgagcgtgtgctgcatttcatgggcactggatccgcggtcccgtcgcaattg
cgtaatgtcacgggcatgctgctgacgcgcggaatttgggtggacagcgacggcgccacg
accgtgaacaaggacgtggctgcatcgatgctgctggactgcggcgaaggctcgctcagc
caactccagcgcaagtttggtgcagagcacatgcccgcggtgctgcggtcgcttcgcctc
gtgcacatctcgcacatgcacgcagaccaccaccttgggctcacgcgtgtgcttgcgcgg
cgccgtgaagcgtttgctgctgttggcgtggacgacccgccgcccgtcgttgttgtcgcc
ccgcattttctgtggctgttcatgcgctacacggcccacctctcctgcgccaccgccgtg
ttcctcgatgcacgttggacacgttttgcgcactggcagctgccgcgcttcgtgccgccc
cacgtcaaggacgcatatgcacgggcgatggcgggcatgggcctgcgtgcgctcgcaaca
cctgcagtcaagcactgcttcgctgcctacgggcttgtgcttgactttgacgacgggtac
cggtttgcgtggtccggggacacgcgcccgtgcaagtcgatggttggcgcggggaaaggg
gcggacgtgcttgtgcacgaggcgacgtttgaggacgggctggaggaccaggcggtgcag
aagaaccacagcacaaccagcgacgccgtgaccgtggcgcagcagatgggcgccaagatg
ctcatcctcacgcatttttcgcagcggtatccgcagatccctgttctcgacgccaagagc
cgcgagcacacggcgtttgggtttgacctgatgagcgtggtgctgcggagggcgaaggag
ctgacagccatgacgccggctatcgaccacatgttcacggcgctaaagcccgaagaggag
gaggaggagggtgatgatgatggcgatatcgaaacgattggtggtgcggacggcaatgcc
aaagggaaaggggagaagaaggggaaggacaaggtgaaggcgaaggtgaagggcaatggg
aaaggtggaggtgtgaaggtggatgatgttgctcgtggaaggaagcagcagaagcagaag
cagccgaaggagagcaagcagacagctgcggtgaaggaggtcaggactgatgctgaccaa
caacaagcatcgtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (14)   

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