KEGG   Salpingoeca rosetta: PTSG_05477
Entry
PTSG_05477        CDS       T04136                                 
Name
(RefSeq) uncharacterized protein
  KO
K14314  nuclear pore complex protein Nup210
Organism
sre  Salpingoeca rosetta
Pathway
sre03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:sre00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    PTSG_05477
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sre03019]
    PTSG_05477
Messenger RNA biogenesis [BR:sre03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     PTSG_05477
SSDB
Motif
Pfam: Big_2 T2SS-T3SS_pil_N
Other DBs
NCBI-GeneID: 16073923
NCBI-ProteinID: XP_004993346
UniProt: F2UBB7
Position
Unknown
AA seq 1854 aa
MRFAPLAAVVLVALLAAVTTSVAALHQYRLSDPRLLLPYPTKSAVVQHNISATGGCFVWS
TTRPHVISVTTPSQKCSTWATVEVIARPGPRMSADIIAREVSSDQKLFCEVTVAQLHDVL
LETTDHTMYLGDPPLKITVSAQDSEENTFSALSSLPFTWKILDATCKPSSSASSRLRFVT
FNEVKYDARPEITALESQGLRGYEVLVQPSHSGRVCVLVSFQSNDYIVEAKAIVAIVERI
NINPPDMYTVAGETSSFAITTQQGQHISLKSGKYSLQSENTSVAEVVPGTSRVKSLAHGV
AKLYIRDKDGLMDASTGANAFVHVVEPTKLRISIRSCNDDLLETPCVLLVNTDYTTTLIL
TDDSNNHIHTDELVFSLSSNAPAVALKDSTTNNTWHRAHTAVVGTADLSAAYFGPDTTAG
AASGTPVLTAQRVVRVVDPIVVTPDRVVIPWSDESSNPVSIQLKATGGSGSYLWSSDASR
VAHVSEGRVVPVGFGAATIAAYDRLQSEIAGYASVDVVYPSALRFVPGPRDAAIGSDITL
HVEFLDDEGNVFDRCSHLVPTWSLSSAAFVKRDTKCGDARCACIVLRASQPERATITVTW
DKLSATADLSAHRRLAIHPDDKDVLVSPGAAHTIRFTGGPRPFPPLLSLHTRDLVPASED
AVGVSGQGDAATTAFTVTCVKTGCQTLTVRVGNQPSSAHPYFGVMEEDTAQFCCERPSHV
VARLDFDLEDVAENPACSHQDSVYLVLAGKECPVYVQPFFNSRTYNNASTIEYSWTNTAS
DMAIAPTTAHTAVTPSGSARAKVQVSTKGHRDQRVSSHLFLEPRPAITTSPARVVLADVR
DARVSVPVVGGSGVFKVHNTTRVVAARVANTTLVVDGKAKGSGKLKVEDECLLPRTVSTQ
VAVEVVPAHHFTANIQNKLQVGASTTAELCLFDKQGRSMPASAYPLVVFAEEEDDTHVQL
RPIGPADTTSNTGRGGNGGCGGWLFQVEGVETGLAKVRFSAAIQPLHGAAYTLSSGNYTI
EVFDALRLSPRRLLLLPGSCFQVEVQNKPTYGHVSVRFHTDNSNYASVSTHGLVCGRTVG
ETSLTATVFGEDPTVALSTDTVLVKVVLATGLHIRFPSRYMVVGSVVEAYATLRHGDEDI
LSGQSIASMTWTSDDPTVLSTHSLFRHEGEDTEEFYAAAVAHAEGVVRVTVSAPCASAYC
RAPSSTIAASFDLTVFSRLRLPAGPDFIVPTSARFQLPVSFSHKRDVQYELFAASPAPSG
PVRSTIAPDGTITTADEREDVVVAVMHVVDGVVLQRAAASLHVDRVRHLSLEPEPSCHHL
TLGSHCIIRVVLQDMTGRPLVYTDGIDVQAFVDKSVARVRMHSSNELIVTATGKGEALLR
VSVHNSPVSNYFRVLVTSQLNPSDVTVPVGSSFCFPPSEASRNATWASSSPAVATVKPPG
HVTIHSEGETEISRTTAQGIAKGSLRSRPIAAARFVAQPAFITNLEASNAFSLRLSYHSR
SGANFSLIPACQGKGFQPMAKVTCAAEGHPHLSVAPAFDAASGKHACQITVSSNDVLSAS
PLVVTATVSPLATSSSSSSSTAVVARTAVTAAPAFHVESSVVSLGSRLASAATLRVRQVL
DLSQLGVEVDSNSLLPDAGSTSDRQYFTSASLRITFVMQAQAEAVVTVERMIASAREHTL
VVFNKYTQQRHAVSVAVLDEPEPEAPPTRAPPAATSDQHGVITMDQSTGAAPSTPSPPDN
SWPLWVYVVLFFLFCIILLLVLHLPSIPPRDPNQSLYVGPQSPQRGAFSRFGSPLQLVSR
IPRTSAMTRATPTKLGKTTTAAPATTTAGAGVVRPTMTTPTRDRRLQARSSRFS
NT seq 5565 nt   +upstreamnt  +downstreamnt
atgcgtttcgcgccactggcagccgtcgtgctggtggcactgctggctgcggtcaccacg
agcgttgccgctttgcaccagtaccgcctgtcagacccacgcctcctccttccttacccc
accaagtccgccgtcgtccagcacaacatctccgccacaggcggctgcttcgtctggagc
accaccaggcctcacgtcatctccgtgaccacgccatcccagaaatgtagcacgtgggcc
actgtggaggtgattgctcggcctgggcctcgcatgtcggccgatatcattgcccgcgaa
gtctcctcggatcagaagctgttttgtgaagtgaccgtggcccagttgcacgatgtgctg
ctggagacaacggaccacaccatgtatcttggtgacccaccactcaagatcaccgtctct
gcacaggacagcgaagagaacacgttctcggcgctgtcgtcgctgccattcacgtggaag
attctcgatgccacgtgcaagccgagctcgtctgcatcctccaggctgcggtttgtcacc
ttcaacgaagtcaagtacgacgcccggccagagatcaccgccctcgagtcgcagggtctt
cgcgggtatgaagtgctggtgcagccctcccactccggtcgcgtctgtgtcctcgtctcc
ttccagagcaacgattatattgttgaggcgaaagcgattgtggcgattgtggagcgcatc
aacataaacccgcccgacatgtatacggtggctggcgagacgtcgtcgtttgccatcaca
acgcagcagggtcagcacatcagcctcaagtctggcaaatactcgctccagtccgaaaac
acctcggttgcagaggttgttcccggcacgtcgcgggtcaagtccctggcgcacggcgtc
gccaagctgtacatccgtgataaggacgggctgatggatgcgtcgacgggtgcgaatgcg
tttgtgcatgttgttgagccgacgaaactgcgcatctccatccgctcgtgcaacgatgac
cttctggagacgccgtgcgtgctgctggtcaacacggactacacaaccacgctcatcctc
accgatgactcaaacaaccacatccacacggacgagcttgtgttttcgctgtcgtccaat
gcccctgccgtggcgctcaaggactcaacgaccaacaacacgtggcaccgcgcccacact
gctgtcgtcggcaccgcggacctctctgccgcatattttgggccggacaccaccgccggc
gctgccagtggcacacctgtcctcactgcacagcgcgttgtgcgggttgttgatccgatt
gttgtgacgcccgatcgcgtggttatcccgtggagtgacgagtcaagcaaccctgtctcc
atccaactcaaggcgacaggcgggtctggctcgtacctgtggagctccgatgcgagccgc
gttgcgcacgtgtctgagggccgcgttgtccccgttggctttggcgccgccaccattgcc
gcttacgaccgcctgcagtctgagattgccgggtatgcgagcgtggacgtggtgtacccg
tcggcgctgcgctttgtcccgggcccgcgcgacgccgccattggcagcgacatcaccttg
cacgtggagtttcttgacgacgaaggaaacgtgtttgaccgctgcagccacctcgtcccc
acctggtccctctcctccgccgcctttgtcaagcgggacaccaagtgcggggatgcccga
tgcgcgtgcatcgtcctgcgcgcgtcccagcccgagcgggccaccatcactgtcacgtgg
gacaagctctctgccaccgcggacctcagcgcccaccgtcgcctggccatccacccggat
gacaaggacgtgcttgtgtcgcctggcgctgcgcacaccatccgcttcaccggcggcccg
cggcccttccccccgctcctctccctccacacccgtgacctcgtccccgccagcgaggat
gccgtgggtgttagcgggcagggcgacgcagccacaaccgccttcaccgtgacgtgcgtc
aagacggggtgtcagacgctgacggtgcgtgttggcaaccagcccagctcggcacatccg
tactttggcgtgatggaggaggacacagcgcagttttgctgcgagcggccgtcacacgtc
gtcgcacgtctcgactttgacctggaggacgttgcagagaacccagcgtgctcgcaccag
gactcggtgtacttggtgcttgcaggcaaggagtgccccgtgtatgtgcagccgtttttc
aactcgcgcacgtacaacaacgccagcacaattgagtactcgtggactaacacggcctcg
gatatggccatcgctccaacaacggcacacaccgcagtcaccccatcaggctctgcgcgt
gcaaaggtgcaagtgtcgaccaaaggccaccgcgaccagcgggtatccagccacctgttc
cttgagccgcgcccggccatcaccacctcccctgcacgcgttgtcctcgccgatgtgcgc
gatgctcgcgtgtctgtgcccgttgtaggcggatcgggcgtgttcaaggtgcacaacacc
acgcgcgttgtggctgcccgcgttgccaacacgacgctggttgtggacggcaaggccaag
ggcagcggcaagctaaaggttgaggatgagtgcctgctgcctcgcacggtgtccacgcag
gttgcggtggaggttgtgcccgcccaccactttacggccaacatccagaacaagcttcaa
gtcggcgcctccaccacagcggagctgtgcctgtttgacaagcagggccggagcatgcct
gcaagcgcctacccgctcgttgtgtttgcagaggaggaagacgatacgcacgtgcagctg
cggcccattggccccgcagacacaaccagcaacaccgggcgtggcggcaacggcggctgt
ggtggctggctgttccaggtggagggtgttgagacgggcctggcaaaggtgcggttctcc
gcagccatccaaccactgcacggcgcagcgtacacgctctcgtctggcaactacaccatt
gaggtttttgatgcgctccgcctgtccccacgccgtcttctgctcctcccaggctcctgc
ttccaggttgaggtgcagaacaagccgacatatgggcatgtgtctgtgcgcttccacacc
gacaacagcaactacgccagcgtgtcgacgcacgggcttgtgtgcgggcgcactgttggt
gagacgtcgctcacagccaccgtttttggggaagacccaacggttgccctgagcacggac
acggtgctggtgaaggttgttcttgcaacgggtctgcacattcgctttccgtcgcggtac
atggtggtcggcagtgtcgtcgaggcgtatgcgacgctgcgacacggcgacgaggacatt
ttgagcgggcagtccattgccagcatgacctggacctccgatgaccccactgtcctcagc
acacactccctcttccgacacgagggcgaggacactgaggagttttacgcggctgcagtt
gcccatgctgagggtgttgttcgcgtgacagtgtctgcaccgtgcgcgtcggcttactgc
cgtgcaccctcgtccaccatcgccgcttcgtttgacctcactgtcttctcccgcctccgt
ctccctgccggcccagatttcatcgtcccaacgtctgcacgcttccagctgccggtgtcc
ttctcccacaagcgggatgtgcagtatgagctgtttgctgcgtcgcctgcgccctccggc
cccgtgcgctccaccattgcccccgacggcactatcaccaccgcagacgagcgggaggat
gttgttgttgccgtcatgcacgttgttgacggggtggtgctgcagcgtgccgccgccagt
ctgcacgttgaccgcgtgcgccacttgtcgctggagcccgagccaagctgccaccacctc
accctcggctcacactgcatcatccgtgttgtgctgcaagacatgacgggccgcccactc
gtgtacacggatggcattgacgtgcaggcgtttgtcgacaagtccgttgcgcgtgtgcgc
atgcactcgagcaatgagctgattgtcacggccacgggcaagggagaggcgctcttgcga
gtgtctgtgcacaactcgcccgtcagcaactacttccgcgtcctggtcacgtcccagctc
aacccaagtgacgtaactgtgcctgttggctcgtccttctgcttccctccatccgaggcg
tctcgcaacgccacctgggcctcatccagcccagccgtcgctaccgtcaagccgccaggc
cacgtcacgatccacagcgagggcgagaccgagatctcgcgcacgacggcgcagggcatt
gcaaagggcagcctgcgcagccgccctattgccgccgcccgctttgttgcccagcccgcg
ttcatcaccaacctggaggccagcaacgcgttttcgctgcgcttgtcgtatcacagccgc
agcggtgccaacttctcgctcatcccggcgtgccagggcaaaggcttccagcccatggcc
aaggtgacgtgtgctgctgagggccacccacacctctcggtcgcacccgcgtttgacgct
gcgagcggcaagcacgcctgccagattaccgtttcctccaacgatgtgctctctgcgtct
ccacttgtcgtcacggccacggtctctccgcttgccacttcgtcttcttcatcatcctcc
acagccgtggttgcgcgcaccgctgtgactgccgcccccgccttccacgtggagtcctct
gttgtttcgctcggcagccggcttgcctccgctgccacgctgcgtgtgcgacaagtgctt
gacctgtcgcagcttggcgtggaggttgacagcaactcgctgctgccggacgcgggctcg
accagcgaccggcagtacttcacctcggcctcgctgcgcatcacgtttgtgatgcaggcg
caggctgaggcggttgtcacggttgagcgcatgattgcttctgcacgcgagcacacgctg
gttgtcttcaacaagtacacgcagcagcgccacgccgtgtccgtcgccgtcctcgacgag
cctgagcccgaagcgccaccgacgcgtgcaccgccagcagcgaccagcgaccagcacggc
gtgattacgatggaccagagcacgggcgcagcaccgtctaccccctcgccgccagacaac
tcgtggccgctgtgggtgtatgtggtgctgttcttcctcttctgcatcattctgctgctt
gtgctgcatcttccgtccattccccctcgcgacccaaaccagagcctctacgttggcccc
caatcgccacaacgtggcgcgttttcgcgctttggatcgccgctgcagctcgtgtctcgc
attccgcgcacgtccgccatgacacgcgcaaccccaaccaagctgggcaagacgaccaca
gcagcgccagccacgacgaccgcgggtgcgggtgttgtgcggccgacaatgacaacgcca
acacgagaccgcagactccaggcgcgctcctctcgcttctcctag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (13)   

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