KEGG   Stenotrophomonas rhizophila: BAY15_3414
Entry
BAY15_3414        CDS       T04500                                 
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
srh  Stenotrophomonas rhizophila
Pathway
srh03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:srh00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BAY15_3414
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:srh03021]
    BAY15_3414
   03019 Messenger RNA biogenesis [BR:srh03019]
    BAY15_3414
Transcription machinery [BR:srh03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     BAY15_3414
Messenger RNA biogenesis [BR:srh03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     BAY15_3414
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N NACHT AAA_25 Spore_III_AA AAA OB_RNB AAA_22
Other DBs
NCBI-ProteinID: AOA73846
UniProt: A0A1B2N8J3
Position
3910091..3911863
AA seq 590 aa
MSDITTSEPGSADAPAEKRVRKPRVAKAAASSADTGSSPEQNALPLAAAPSAPAPAAPAA
PQQASQAPAASGGDAPAPQGGGQDAADGGQRNNNNNPQGGQNPYQQGQNQGQGQNQGQGN
RRDRFRNRRDRDRNRGGGGGGFRDDGMPQDNGEQQPFVRSQQANVPEGFPVYSLSDLKRM
PAQKLLEIAEQLQISEGVARARKQDVIFALLKVLTRHGDGVAADGVLEILPDGFGFLRAA
EASYLAGPDDTYISPSQIRRFNLRTGDHLSGRIRFPKDGERYFALSIVDTINGEPLEASK
NKVLFENLTPLFPRKRFTLERGNGSSEDITGRIMDLMAPQGKGQRALIVSPPKAGKTMLM
QQVATAITTNHPDVHMIVLLIDERPEEVTEMQRTVRGEVISSTFDEPAARHVQVAEMVIE
RAKRLVEHKKDVVILLDSITRLARAYNNVVPSSGKVLTGGVDANALHRPKRFFGAARNVE
EGGSLTIIATALVDTGSKMDEVIYEEFKGTGNSEVHLNRRIAEKRVYPAIDINRSGTRRE
DLLIEPELLQKIWILRKLLHPMDEIAAMEFLLDKMKNTKSNDEFFGSMKR
NT seq 1773 nt   +upstreamnt  +downstreamnt
ttgtccgatatcactacttccgaacccgggagcgccgacgcgcccgccgagaagcgcgtg
cgcaagccgcgcgtcgccaaggccgctgccagcagcgccgacaccgggtcttcccccgaa
cagaacgccctgcccctggctgccgcgccctccgcgccggcgccggctgcaccggcagcg
ccgcagcaggcctcccaggcaccggccgcttccggcggcgatgccccggccccgcagggc
ggtggccaggacgccgccgacggcggtcagcgcaacaacaacaacaacccgcagggcggc
cagaacccgtaccagcagggtcagaaccagggccagggccagaaccaaggtcagggcaac
cgccgtgaccgtttccgcaatcgccgtgaccgcgaccgcaatcgcggcggtggtggtggt
ggcttccgcgacgacggcatgccgcaggacaatggcgaacagcagccgttcgtgcgcagc
cagcaggccaacgtgcccgagggcttcccggtctattcgctgagcgacctcaagcgcatg
ccggcccagaagctgctggaaatcgccgagcagctgcagatctccgaaggcgtcgcccgc
gcccgcaagcaggacgtgatcttcgccctgctcaaggtgctcacccgccatggcgacggc
gtggccgccgacggcgtgctggaaatcctgccggacggcttcggcttcctgcgcgcggct
gaagccagctacctggccgggccggacgatacctacatttcgcccagccagatccgccgc
ttcaacctgcgcaccggcgaccacctgtccggccgcatccgcttcccgaaggacggcgag
cgttacttcgcgctgtcgatcgtggacaccatcaacggtgagccgctggaagcgtccaag
aacaaggtgctgttcgagaacctcaccccgctgttcccgcgcaagcgcttcaccctggaa
cgtggcaacggttcgtccgaagacattaccggccgcatcatggatctgatggcaccgcag
ggtaagggtcagcgtgcgctgatcgtctccccgcccaaggccggtaagaccatgctgatg
cagcaggtggcgacggcgatcaccaccaaccacccggacgtgcacatgatcgtgctgctc
atcgacgagcgtccggaagaagtgaccgaaatgcagcgcaccgtgcgcggcgaagtcatc
agctccaccttcgacgaaccggccgcgcgccacgtgcaggttgccgaaatggtgatcgag
cgcgccaagcgcctggtggaacacaagaaggacgtggtgatcctgctcgactcgatcacc
cgcctggcacgcgcctacaacaacgtggttcccagctccggcaaggtgctcaccggtggt
gtggacgccaacgccctgcaccgcccgaagcgcttcttcggtgccgcgcgtaacgttgaa
gaaggcggcagcctgaccatcatcgccaccgcgctggtcgacaccggcagcaagatggac
gaggtgatctacgaagagttcaagggcaccggcaacagcgaagtgcacctgaaccgtcgt
atcgccgaaaagcgcgtgtacccggccatcgacatcaaccgttcgggcacacgccgcgaa
gacctgttgatcgaaccggagctgctgcagaagatctggatcctgcgcaagctgctgcac
ccgatggacgaaatcgccgcgatggagttcctgctcgacaagatgaagaacaccaagtcc
aacgacgagttcttcggttcgatgaagcgctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (18)   

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