KEGG   Streptomyces rochei: SRO_3386
Entry
SRO_3386          CDS       T06265                                 
Name
(GenBank) type I DNA topoisomerase
  KO
K03168  DNA topoisomerase I [EC:5.6.2.1]
Organism
srj  Streptomyces rochei
Brite
KEGG Orthology (KO) [BR:srj00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:srj03032]
    SRO_3386
   03400 DNA repair and recombination proteins [BR:srj03400]
    SRO_3386
Enzymes [BR:srj01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     SRO_3386
DNA replication proteins [BR:srj03032]
 Prokaryotic type
  DNA Topoisomerases
   SRO_3386
DNA repair and recombination proteins [BR:srj03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      SRO_3386
SSDB
Motif
Pfam: Topoisom_bac Toprim_C_rpt Toprim HC2 Toprim_2 Toprim_4
Other DBs
NCBI-ProteinID: BBC94562
Position
complement(3772906..3775740)
AA seq 944 aa
MSPTSETAQGGRRLVIVESPAKAKTIKGYLGPGYVVEASVGHIRDLPNGAAEVPEKYTGE
VRRLGVDVEHDFQPVYVVNADKKAQVKKLKDLLKDSDELFLATDEDREGEAIAWHLQEVL
KPKIPVKRMVFHEITKDAIREAVANPRQLNQKLVDAQETRRILDRLYGYEVSPVLWKKVM
PRLSAGRVQSVATRLVVERERERIAFRSAEYWDLTGTFGTGRAGDSSDPSSLVARLQTVD
GRRVAQGRDFDSVGQLKTANTLHLDEATARSLAAALENTRFAVRSVESKPYRRSPYAPFR
TTTLQQEASRKLGYGAKATMQIAQKLYENGYITYMRTDSTTLSETAIAAARAQVTQLYGA
DYLPPQPRTYAVKVKNAQEAHEAIRPSGDRFRTPAETGLTGDQFKLYELIWKRTVASQMK
DATGNSVTVKIGGTAADGRDVEFSASGKTITFHGFLKAYVEGADDPNAELDDRERRLPQV
AEGDALSAEEITVDGHATKPPARYTEASLVKELEEREIGRPSTYASIIGTILDRGYVFKK
GTALVPSFLSFAVVNLLEKHFGRLVDYDFTAKMEDDLDRIARGEAQAVPWLKRFYFGEGT
ISGAAADAGNGDGDHLGGLKELVTDLGAIDAREVSSFPVGNGIVLRVGRYGPYIERGEKE
TEQHQRADIPDDLAPDELTIELAEKLLAEPSGDVELGADPATGHQIVAKKGRYGPYVTEI
LPEGTPKTGKNAVKPRTASLFKSMALDTVTLDDALKLMSLPRVVGADAEGQEITAQNGRY
GPYLKKGTDSRSLQSEDQIFTITLEEALAIYAQPKQRGRAAAKPPLKELGEDPVSKKPVV
VKDGRFGPYVTDGETNATLRSGDSVEEITPERGFELLAEKRAKAPAKKTAKKAPAKKTAP
AKKTAAKKTAAKKTTASAAKKTTAKKTTTKKATATKSTASGSED
NT seq 2835 nt   +upstreamnt  +downstreamnt
ttgtccccgaccagcgagaccgcacagggcggccgccgactcgtcatcgtcgagtcgcct
gccaaggcgaagacgatcaagggctacctcggccccggctacgtagtcgaagcgagcgtc
gggcacatccgtgacctccccaacggcgccgccgaggtgcccgagaagtacaccggcgag
gtgcgccgcctcggtgtggacgtcgagcatgacttccagccggtctacgtggtgaacgcg
gacaagaaggcccaggtcaagaagctcaaggacctgctgaaggactccgacgaactcttc
ctggccaccgatgaggaccgcgagggcgaggccatcgcctggcacctccaggaggtcctc
aagccgaagatccccgtcaagcggatggtcttccacgagatcaccaaggacgcgatccgc
gaggccgtcgccaacccgcgccagctcaaccagaagctggtcgacgcccaggagacccgg
cgcatcctcgaccgcctctacggctacgaggtctcgccggtcctgtggaagaaggtcatg
ccccggctgtcggccggccgtgtccagtccgtcgccacccggctcgtggtcgagcgggaa
cgcgagcgcatcgccttccgctccgccgagtactgggacctcaccggcaccttcggcacc
ggccgcgcgggcgactcctccgacccgtcgtcgctggtcgcgcgcttgcagaccgtcgac
ggacggcgtgtcgcgcagggccgtgacttcgactccgtggggcagctgaagaccgcgaac
accctccacctggacgaggccaccgcccgctcgctggccgccgccctggagaacacccgc
ttcgccgtgcgctcggtggagtcgaagccgtaccgccgctcgccgtacgcgccgttccgt
acgacgacgctccagcaggaggccagccgcaagctcggctacggcgccaaggcgaccatg
cagatcgcccagaagctgtacgagaacggctacatcacgtacatgcgtacggactccacg
acgctgagcgagaccgccatcgcggccgcccgcgcccaggtcacgcagctgtacggcgcc
gactacctgcccccccagccgcgtacgtacgcggtgaaggtgaagaacgcgcaggaggcg
cacgaggcgatccgtccctcgggtgatcgtttccgcacccccgcggagaccggtctgacc
ggcgaccagttcaagctgtacgaactgatctggaagcggaccgtcgcctcccagatgaag
gacgcgaccggcaacagcgtgaccgtgaagatcggtggcaccgccgccgacggccgggac
gtggagttcagcgcctccggcaagacgatcaccttccacggcttcctcaaggcgtacgtc
gagggcgccgacgacccgaacgccgagctggacgaccgcgagcgccggctgccgcaggtc
gccgagggcgacgcgctgtccgccgaggagatcacggtcgacggccacgccaccaagccc
ccggcccgctacaccgaggcctccctggtcaaggagctggaagagcgcgagatcggccgg
ccgtcgacctatgcgtcgatcatcggcacgatcctcgatcgcggctatgtcttcaagaag
ggcacggcgctcgtgccgtccttcctgtccttcgccgtcgtaaaccttctggagaagcac
ttcggccggctggtcgactacgacttcaccgccaagatggaggacgacctcgaccgcatc
gcccgcggcgaggcccaggccgtgccgtggctgaagcgcttctacttcggcgagggcacc
atcagcggcgccgccgccgacgcgggcaacggcgacggggaccacctcggcggcctcaag
gaactcgtcaccgacctgggcgcgatcgacgcccgcgaggtgtcctccttcccggtgggc
aacggcatcgtgctgcgggtcggccgctacggcccgtacatcgagcgcggcgagaaggag
accgagcagcaccagcgcgccgacatccccgacgacctggcgccggacgagctgaccatc
gagctggccgagaagctgctggccgagcccagcggcgatgtcgagctgggcgccgacccg
gccaccggccaccagatcgtcgccaagaagggccgctacggcccgtacgtcaccgagatc
ctccccgagggcaccccgaagaccggcaagaacgcggtcaagccgcgcaccgcctccctc
ttcaagtccatggcgctggacacggtgacgctggacgacgcgctgaagctgatgtccctg
ccgcgtgtcgtcggcgcggacgccgagggccaggagatcaccgcccagaacggccgctac
gggccgtatctgaagaagggcacggactcgcgctcgctccagagcgaggaccagatcttc
accatcacgctggaagaggccctggcgatctacgcccagcccaagcagcgcgggcgggcc
gccgccaagccgccgctgaaggagctgggcgaggacccggtctccaagaagccggtcgtg
gtcaaggacggccgcttcgggccgtacgtcaccgacggcgagaccaacgcgaccctgcgc
tccggcgacagcgtcgaggagatcaccccggagcgcggcttcgaacttcttgccgagaag
cgggcgaaggccccggccaagaagaccgccaagaaggcgccggccaagaagaccgccccg
gcgaagaagaccgccgccaagaagacggcggccaagaagacgacggcgagcgccgcgaag
aagaccacggcgaagaagacgaccaccaagaaggcgacggcgaccaagtcgacggcttcc
ggttcggaggactga

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Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein domain (6)   
   Pfam (6)   
All databases (14)   

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