KEGG   Serratia plymuthica 4Rx13: SOD_c17250
Entry
SOD_c17250        CDS       T02710                                 
Symbol
rne
Name
(GenBank) ribonuclease E
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
srl  Serratia plymuthica 4Rx13
Pathway
srl03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:srl00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SOD_c17250 (rne)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:srl03019]
    SOD_c17250 (rne)
   03009 Ribosome biogenesis [BR:srl03009]
    SOD_c17250 (rne)
Enzymes [BR:srl01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     SOD_c17250 (rne)
Messenger RNA biogenesis [BR:srl03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     SOD_c17250 (rne)
Ribosome biogenesis [BR:srl03009]
 Prokaryotic type
  rRNA processing factors
   SOD_c17250 (rne)
SSDB
Motif
Pfam: RNase_E_G RNase_E_G_Thio PNPase_C S1
Other DBs
NCBI-ProteinID: AGO54704
Position
complement(1888222..1891593)
AA seq 1123 aa
MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE
RHGFLPLKEIAREYFPSNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFISLA
GSYLVLMPNNPRAGGISRRIEGDDRTELKEALSSLQLPDGMGLIVRTAGVGKSADALQWD
LSFRLKHWEAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVLDLAKEH
IAALGRPDFSSKIKLYSGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALTAID
INSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRL
RDAVRQDRARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCNGTGTIRDNESLALSI
LRLIEEEALKENTKEVHAIVPVQVASYLLNEKRESVSAIEKRQGGVKAIIVPNDQMQTPH
YSVLRVRKGEETPTLSYLLPKLHEEEMAQPLDDAPMERKRPEQPALASFSLAADAPPPAE
EPVAAQSAAAAVVAKPSAPTAAKPGLLGRLFGGLKALFASEEQPVVEAKPAVEAPKAEGN
GENRRQDRRGQRRQGSGRKERGERGERGERGERSDRPERGERKERGEGRDNRERDNREPR
ENREPRDNRSEGRETREVRDEQRRNNRRNAPQVAAPVAEAPQSEEAAKAQREEQQQRRDQ
RAERQRRRQEEKRQAQQEVAALESVDTSTNVISDEDLEERQQQNMQRRQRRPLSQKVRVL
SAEEELHRAAEELLAPKAPVAKTQDVKLALEEDSVKLLPETLETPAEDDVQGDNRNGENG
MPRRSRRSPRHLRVSGQRRRRYRDERYPAQSPMPLAGAFASPEMASGKVWVSYPVTQTAQ
VIEEAEVQTDATEIAADNVMAQQAVDVAAPVIAEAAAQTLAPVETAEVVIAEEAQPEVET
VAPVITAQLEETAAVPQAETPVVEEATVVEETTVVEEATNVEATPVVEAAAVAEETAVVV
EPVAAPTPIIVEAAPVQEAAAPVVVAEKPPVVQQPAPVQGTLYKHIATAPMTKAPAPAYE
PEEQKGSDWQRPSFNFEGKGSAGGHAAVNQATAPAAKPQPVNE
NT seq 3372 nt   +upstreamnt  +downstreamnt
atgttgattaacgcaactcagcaggaagagttgcgtgttgcccttgtagatggacagcgg
ctgtatgatttggacattgaaagcccaggtcatgaacagaaaaaagcgaatatttacaaa
ggcaaaatcactcgtattgaaccaagtcttgaagcagcgttcgttgattacggcgcagaa
cggcatggtttcctccctcttaaagaaatcgcccgcgaatacttcccaagtaactactct
tctcatggtcgcccgaacatcaaagatgtgctgcgcgaaggccaggaagttatcgttcag
gttgacaaagaagaacgtggtaacaaaggcgcagccttgaccaccttcatcagtctggcc
ggcagttatctggtgctgatgccgaacaacccgcgtgccggtggcatttcccgccgcatc
gagggtgacgaccgtaccgaactgaaagaagcgctttcctccctgcaattgccggatggc
atgggtctgattgttcgtaccgcgggcgttggcaaatctgccgatgcgctgcagtgggac
ctgtctttccgtctgaagcattgggaagccatcaagaaagccgccgaaggccgccctgct
ccgttcctgatccatcaggaaagcaacgtgatcgtgcgcgcattccgtgactatctgcgc
ccggacatcggcgaaatcctgatcgataaccctaaagttctcgatttggcaaaagagcac
atcgctgctctgggccgcccggatttcagcagcaaaatcaaactgtacagcggtgaaatc
cctctgttcagccattaccaaatcgagtctcagatcgaatccgccttccagcgtgaagtt
cgcttgccttccggcggctcgatcgtcatcgacactaccgaagccttgaccgccatcgac
atcaactccgcgcgagcaacccgcggtggcgatatcgaagaaactgcgttcaacaccaac
ctggaagcggcggacgaaatcgctcgccaactgcgcttgcgtgaccttggcggcctgatc
gttatcgacttcatcgatatgaccccagtgcgccaccagcgcgaagtagaaaaccgcctg
cgtgacgcagtgcgtcaggaccgtgcgcgtatccagatcggccgcatttcccgctttggc
ctgcttgagatgtcgcgtcagcgcctcagcccgtcactgggtgaatccagtcatcacgtc
tgccctcgctgtaacggcaccggcaccatccgtgataacgaatcgctggcactttccatt
ctgcgcctgatcgaagaagaagcgctgaaggaaaataccaaagaagttcacgctatcgtg
ccggttcaggtcgcttcttacctgctgaacgaaaaacgtgagtcggtgagcgcaatcgaa
aaacgtcagggtggcgtgaaagcgatcatcgtgccgaacgatcagatgcaaaccccgcac
tactcggtgctgcgtgtgcgcaaaggcgaagaaacaccaaccctgagctacctgctgccg
aaattgcacgaagaagagatggcccagccactggacgatgcgccgatggagcgcaaacgt
ccggaacaaccggctctggcttcgttctctctggcggctgacgccccgccgcctgccgaa
gaacctgtggcggcacagtccgctgctgccgctgtcgtggccaaaccaagcgccccaacc
gctgcaaaaccaggtctgttgggccgcctgttcggtggcctgaaagcgctgttcgccagt
gaagaacaaccggttgttgaagccaaacctgccgttgaagcacctaaggccgaaggcaac
ggtgaaaaccgccgccaggatcgccgtggtcaacgccgtcagggttctggccgtaaagaa
cgtggtgaacgtggtgaacgcggagaacgtggtgagcgtagcgatcgtcctgaacgtggc
gaacgcaaggaacgcggcgaaggccgtgacaatcgcgagcgcgataaccgtgaaccacgt
gaaaatcgtgagccgcgcgacaatcgcagtgaaggccgtgaaacgcgtgaagtgcgcgat
gaacaacgccgtaacaaccgccgcaatgcaccgcaggttgccgcaccggttgccgaggcg
ccacagtctgaagaagccgccaaggcacagcgtgaagagcagcaacaacgccgtgaccag
cgtgccgaacgccagcgccgtcgtcaggaagagaagcgccaggctcagcaggaagtggct
gcactggaaagtgtagacaccagcaccaacgttatcagcgatgaagatctggaagaacgc
cagcagcaaaacatgcagcgtcgccagcgtcgtcctctgtcgcagaaagttcgcgtattg
tccgcggaagaagaattgcatcgcgcagcggaagagctgttggcccctaaagcgccagtg
gcgaaaacccaggacgtgaaactggctctggaagaagacagcgttaaattgctgccagaa
acccttgagacaccggctgaagatgacgttcagggcgacaaccgcaacggcgaaaatggc
atgccacgccgttcacgccgctcgccacgccatctgcgcgtgagcggtcagcgccgtcgc
cgttaccgtgatgagcgttaccctgcccagtcgccaatgccgttggctggggctttcgcc
tctccggaaatggcttctggcaaggtatgggtaagttaccctgtaacacaaacagcacaa
gtgattgaagaagctgaagttcagactgatgctaccgaaatcgcagccgacaacgtgatg
gcacaacaagctgtcgacgtagccgctccggttatcgctgaagctgccgcacaaaccctc
gcaccggtagaaaccgctgaggttgtcattgcagaagaagctcagccggaagttgaaact
gttgcgccggtcattacggctcaattggaggaaacggctgcggtaccgcaggctgagacg
ccagtagttgaagaagctaccgtggttgaagagacgaccgtggttgaagaagctacgaat
gtcgaagcaaccccggtggttgaagccgcggctgttgctgaagagactgccgttgttgtt
gagcctgtcgcagcgccaacgccgatcatcgttgaagccgcacctgttcaggaagctgct
gctccggtcgttgttgcagaaaagccgccggttgttcagcagccagcgccggtgcagggg
acactctataaacatatcgccacagcgccaatgaccaaggccccagcgccggcttacgag
ccggaagagcagaaaggcagcgattggcaacgcccctccttcaatttcgaaggtaaaggc
tcggcgggaggtcatgctgcggtgaatcaagccacagcaccggcagccaaaccgcagccg
gttaacgaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (4)   
   Pfam (4)   
All databases (14)   

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