KEGG   Serratia plymuthica 4Rx13: SOD_c17400
Entry
SOD_c17400        CDS       T02710                                 
Symbol
holB
Name
(GenBank) DNA polymerase III subunit delta'
  KO
K02341  DNA polymerase III subunit delta' [EC:2.7.7.7]
Organism
srl  Serratia plymuthica 4Rx13
Pathway
srl03030  DNA replication
srl03430  Mismatch repair
srl03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:srl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    SOD_c17400 (holB)
   03430 Mismatch repair
    SOD_c17400 (holB)
   03440 Homologous recombination
    SOD_c17400 (holB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:srl03032]
    SOD_c17400 (holB)
   03400 DNA repair and recombination proteins [BR:srl03400]
    SOD_c17400 (holB)
Enzymes [BR:srl01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     SOD_c17400 (holB)
DNA replication proteins [BR:srl03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     SOD_c17400 (holB)
DNA repair and recombination proteins [BR:srl03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     SOD_c17400 (holB)
SSDB
Motif
Pfam: DNApol3-delta_C DNA_pol3_delta2 HolB_lid
Other DBs
NCBI-ProteinID: AGO54719
Position
1903364..1904371
AA seq 335 aa
MNWYPWLNTPYRQLVGQYAAGRGHHALLLHAAAGNGDEALAYGLSRWLICQRHNGEKSCG
ECHSCRLMLAGNHPDYHVLTPEKGKSSLGIEPIRQVIETLYSHAQQGGAKVIWLPQAELL
TEAAANALLKTLEEPPEKTYFLLSCREPSRLLATLRSRCFYWHLASPDEQLSLQWLNRQM
PGNPVDLLTALRLHDGAPLAAEQLLQPERWQQRGALCAALNAALPQHDMLSLLPVLNHED
VAERLHWLCALLVDAMKWQQGAASFALNQDQQPLVQQLASQLSGTSLQQVVQQWLNCRHQ
LLNVTGVNRELLLTERLLSWEQMLGATGYFHPHSL
NT seq 1008 nt   +upstreamnt  +downstreamnt
atgaactggtacccgtggctgaacacgccttaccgtcagttggtcgggcaatatgccgca
ggccgtggtcaccatgcgctgttgctgcatgctgccgccggcaatggcgacgaggcgctg
gcctatggcctgagtcgctggttgatttgtcaacggcataacggcgagaaaagctgcggc
gagtgccacagctgccggcttatgctggcgggcaaccatccggactatcacgtattgacg
ccggagaagggcaaaagcagcctggggattgaacctatccgccaggtgatcgaaaccctt
tattcccacgcccagcagggtggcgccaaggttatctggttgccgcaggcggaactgctg
actgaagcggccgctaatgccctgttgaaaacgctggaagagccgccggaaaaaacctat
ttcctgttgagctgccgcgagccttcacggttgttggcgacattgcgcagtcgctgtttc
tattggcatctcgccagcccggatgagcaactcagtttgcagtggttaaaccggcaaatg
ccgggcaatccggtggatctcctcactgcgctgcggctgcatgacggtgcgccgctggct
gccgaacaactgctgcaacccgagcgttggcagcagcgcggcgctctgtgcgcagcactg
aatgccgccttgccgcagcatgacatgctgtcgctgttgccggtgctgaatcatgaagac
gtggcggagcggctgcactggctatgcgcattgctggtggatgccatgaagtggcagcag
ggcgcggcgagctttgcgcttaatcaggatcagcaaccgctggtacagcaattggccagc
cagctgagcggcacctcgctgcagcaagtggtacagcaatggcttaactgtcgccatcag
ttgcttaacgtaaccggcgtcaatcgcgagctgctgctgaccgaacgattactcagttgg
gagcagatgctcggtgctaccggctattttcatcctcattcgttgtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (3)   
   Pfam (3)   
All databases (15)   

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