KEGG T02710: SOD

Serratia plymuthica 4Rx13: SOD_c31860

Entry

SOD_c31860        CDS       T02710

Symbol

gyrA

Name

(GenBank) DNA gyrase subunit A

K02469

DNA gyrase subunit A [EC:5.6.2.2]

Organism

srl Serratia plymuthica 4Rx13

Brite

KEGG Orthology (KO) [BR:srl00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:srl03032]
    SOD_c31860 (gyrA)
   03400 DNA repair and recombination proteins [BR:srl03400]
    SOD_c31860 (gyrA)
Enzymes [BR:srl01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.2  DNA topoisomerase (ATP-hydrolysing)
     SOD_c31860 (gyrA)
DNA replication proteins [BR:srl03032]
Prokaryotic type
  DNA Topoisomerases
   SOD_c31860 (gyrA)
DNA repair and recombination proteins [BR:srl03400]
Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      SOD_c31860 (gyrA)

SSDB

Motif

Pfam:

DNA_topoisoIV DNA_gyraseA_C

Other DBs

NCBI-ProteinID:

AGO56151

Position

complement(3573320..3575971)

AA seq 883 aa
MSDLAREITPVNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSVLGNDWN
KPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAM
RYTEVRMSKIAHELLADLEKETVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMAT
NIPPHNLSEVINGCLAYIDDENISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKI
YLRARAEVETDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG
MRIVVEIKRDAVGEVVLNNLYSLTQLQVTFGINMVALHQGQPKLLNLKDILQAFVRHRRE
VVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAGLVAQAWDLGNV
GAMLERAGDDAARPEWLEPEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKE
LLTFIAELIFILENPDRLMEVIREELVAVKELYNDGRRTEITANTSDINIEDLINQEDVV
VTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLY
WMKVYQLPEASRGARGRPIVNLLPLEANERITAILPVREYEEGRHVFMATASGTVKKTAL
TEFSRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSANGKVVRFPETQVRSMGRTATG
VRGINLGEGDGVISLIVPRGEGDILTVTQNGYGKRTAVTEYPTKSRATQGVISIKVSERN
GQVVGAVQVETTDQIMMITDAGTLVRTRVSEVSVVGRNTQGVTLIRTAEDENVVGLQRVA
EPVEDEELDSLEPGAEEAEEDAAPLDDADDDSEAADDAEDDNA

NT seq 2652 nt +upstreamnt +downstreamnt
atgagcgaccttgccagagaaatcacaccggtaaacatcgaagacgagttaaaaaactcg
tatctggattacgcgatgtccgtcattgtcggacgtgcgctgccagatgttcgtgatgga
ctgaagccggtgcaccgccgcgttctgttcgcgatgagtgtattgggtaacgactggaat
aaaccatacaagaaatcggcccgtgtcgtcggggacgtgatcggtaaataccacccacac
ggtgacagcgcggtatacgacaccatcgtgcgtatggctcagccgttttcactgcgctat
atgctggtggacggtcagggtaacttcggctccgtcgacggcgactccgccgcggcgatg
cgttataccgaagtacgcatgtccaaaattgctcacgaattgctggcggatctggaaaag
gaaaccgtcgacttcgtgcctaactatgatggcaccgagcagatcccggccgtcatgcca
accaagatcccgaacctgctggttaacggctcgtcgggcatcgctgtgggcatggccacc
aacattccgccgcataacctgtctgaggttatcaacggctgcctggcttacatcgatgat
gaaaacatcagcatcgaaggcctgatggaacacatcccggggccggacttcccgacggcg
gcgatcatcaacggtcgccgtggcatcgaagaagcctaccgtaccgggcgcggtaaaatc
tacctgcgcgctcgtgccgaagtagaaaccgacgccaaaaccggccgcgaaaccattatt
gttcacgaaatcccgtatcaggtgaacaaagcgcgtctgatcgagaagatcgccgagctg
gtaaaagaaaaacgcgtggaaggcatcagcgcgctgcgtgacgagtccgacaaagacggc
atgcgcatcgtggttgaaatcaaacgcgacgcggtcggcgaagtggtactgaacaatctg
tattcgctgactcagctgcaggtcactttcggcatcaacatggtggcattgcatcagggc
cagccaaaactgctgaacctgaaagacattctgcaggcgtttgtccgtcatcgccgtgaa
gtggtgacccgccgtaccatcttcgaactgcgtaaagcccgtgaccgcgcccatattctg
gaagcgttggccatcgcgctggcgaacatcgatccgatcattgaactgatccgtcgtgcg
ccgacccctgcggaagctaaagccgggttggttgctcaagcctgggatctgggcaatgtg
ggcgcgatgctggaacgtgccggtgacgacgcggcccgccctgagtggctggagccggag
tttggcatccgtgacggtaaatactacctgaccgagcaacaggctcaggcgattttggat
ctgcgtctgcagaaactgaccggcctggagcatgaaaagctgctggacgagtataaagag
ctgctgactttcatcgctgagctgatctttattctggaaaaccccgatcgtctgatggaa
gtgatccgcgaagaactggtggcagtcaaagagctgtacaacgacggccgtcgcaccgag
atcaccgccaacacctcagatatcaatatcgaagacctgatcaaccaggaagacgtggtc
gttacgctgtcgcaccagggctatgtgaaatatcagccgctgagcgactatgaagcgcaa
cgccgtggcggtaaaggcaagtcagccgcgcgtattaaagaagaagactttatcgatcgt
ctgttggtggccaacacccacgatacgatcctgtgcttctccagccgtggccgcctgtac
tggatgaaggtgtatcagttgcctgaagccagccgtggcgcacgcggtcgtccaatcgtc
aacttgctgccgctggaagccaatgagcgtatcaccgccattctgccggtgcgcgagtat
gaagaagggcgtcacgtgtttatggcaaccgccagcggcaccgtgaagaaaaccgctttg
accgagttcagtcgtccgcgcagcgccggcatcatcgcagtcaacctcaatgagggcgat
gagctgattggtgttgacctgaccgacggcagcaacgaagtcatgctgttctccgccaac
ggtaaagtggtgcgcttcccggaaacgcaggtgcgttcaatgggccgtaccgctaccggc
gttcgcggtatcaacctgggtgaaggcgatggcgtcatttccctgatcgttccgcgcggt
gaaggcgatatcctgaccgtgacccagaatggctacggcaaacgaaccgcagtcaccgaa
tacccgaccaagtcgcgcgctacccaaggggtaatctccatcaaggtgagcgagcgtaat
ggtcaggttgtcggcgcggtgcaggtggaaaccaccgatcagatcatgatgatcaccgat
gccggtacgttggtgcgtacccgcgtgtcggaagtcagcgtggtcggccgtaatacccag
ggtgttacgttgatccgtactgcggaagacgagaacgtcgtcggtctgcagcgcgttgcc
gagccggtggaagacgaagagttggacagccttgagccgggtgcggaagaagcggaagaa
gacgccgcaccgctggacgacgcagacgatgattctgaagccgcagatgatgcggaagac
gacaacgcctaa

All links

Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (2)   
   Pfam (2)   
All databases (11)   

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