KEGG T01209: SRM

Salinibacter ruber M8: SRM_01297

Entry

SRM_01297         CDS       T01209

Symbol

topA

Name

(GenBank) DNA topoisomerase I

K03168

DNA topoisomerase I [EC:5.6.2.1]

Organism

srm Salinibacter ruber M8

Brite

KEGG Orthology (KO) [BR:srm00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:srm03032]
    SRM_01297 (topA)
   03400 DNA repair and recombination proteins [BR:srm03400]
    SRM_01297 (topA)
Enzymes [BR:srm01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     SRM_01297 (topA)
DNA replication proteins [BR:srm03032]
Prokaryotic type
  DNA Topoisomerases
   SRM_01297 (topA)
DNA repair and recombination proteins [BR:srm03400]
Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      SRM_01297 (topA)

SSDB

Motif

Pfam:

Topoisom_bac Toprim_C_rpt Toprim

Other DBs

NCBI-ProteinID:

CBH24218

UniProt:

D5H863

Position

1465002..1467590

AA seq 862 aa
MKRLVVVESPTKARTIREFLPETGYRVEASMGHIRDLPASADQIPSEYKDEDWSRLGVKV
TNGFEPLYVVPPDKKEVVRDLKQAVSDADRLYIATDEDREGESIGWHLIHTLDPDVPVER
MVFHEITEDAIQRALDDTRDIDQHLVEAQQTRRILDRLVGYSISPLLWRKIKPKLSAGRV
QSVAVRLLVQKERERITFVPATYWDLDAQLAKQGIGVEAEMTHLNEVRLASGKDFDEDTG
RLKESLTEGEDVVLLDEEQATALAEGLPETRWRIDDIKERTRTKSPFPPFITSTLQQEAN
RKLNLSSSRTMSVAQSLYENGYITYMRTDSTNLSSEAVEGARRTVTQRYGDEYLSDGVRQ
YSSSDSAQEAHEAIRPAGSEMKTKDELGLSGIEAALYDLIWKRMLATQTADAKVRYTNVY
FDAEVDGDVARFRASGKRLDFPGFFRVLVEGSEDPEAALRDQERPLPPLEVGETAAQSAD
DDGFQVRSVEPLGHETKPPSRYTEASLVETLEEEGIGRPSTYASIIGTIQQRGYVRKKGS
ALVPTFTAFATNNLMETQFEPLVDVHFTAEMEDVLDDIARGRKDPTPYLRDFYKGEEGVE
TRVEQGLDDIDPKQISEMSFPDQWGEYVVRVGKYGAYVEGEMDGATVTASIPDDLAPGDT
TEERLREILEEANRGDRVLGIHPEASLPVLLKSGPYGPYVQLGDDEEEDDPKRVSLPPDV
EPEDVDFDLGVRIVDLPRTLGEHPDTGKEIEADIGRYGPYVRHEGTFASLQKGDDVLEVG
LERALELIRRKEARNEPDRVLGPHPGSDEPVEVWNGRYGPYVKHDGTNASLKDDQSIDDV
TMDDALDLLAEKGDEATQKVRE

NT seq 2589 nt +upstreamnt +downstreamnt
atgaagcgtttggttgtcgttgagtccccgaccaaggcccggaccatccgagaatttctt
ccggagaccgggtatcgcgtcgaggcgagcatgggacacattcgggaccttcccgcgtcg
gcggaccagattccctcggagtacaaggacgaagactggtcgcggctcggggtgaaggtg
accaatgggttcgagccgctctacgtggtgccgccggacaaaaaggaggtcgtccgggac
ctgaaacaggccgtgtcggacgcggaccggctctacatcgcgacggacgaggatcgggag
ggcgagtcgatcggatggcacctcatccacaccctcgatcccgacgtgccggtcgagcgg
atggtcttccacgagattacggaggacgccatccagcgggccctggacgacacgcgcgac
atcgaccagcacctcgtcgaggcgcagcagacgcgtcgcatcctagaccggctcgtgggg
tattcgatctcgccgctgctctggcgcaagattaagccgaagctctcggcgggccgcgtg
cagagcgtggcggtgcggctgctggtgcagaaagagcgggagcgcatcacgttcgtgccc
gccacctactgggacctcgacgcgcagctggccaagcagggcatcggggtggaggccgag
atgacgcacctgaacgaggtgcggctcgcgtccggcaaggacttcgacgaggacaccggg
cggctcaaagagtcgctgaccgaaggggaggacgtggtcctgctcgacgaggagcaggcc
accgcccttgctgaggggctcccggagacgaggtggcgcatcgacgacatcaaagagcgg
acgcgcacgaagtcgccgttcccgccgttcatcacgtccaccctccagcaggaggccaac
cgcaagctcaacctctcgtcgagccggacgatgagcgtcgcgcagtcgctctacgagaac
ggctacatcacctacatgcggaccgactcgacgaacctgtcgtccgaggcggtggagggg
gcccggcgcaccgtcacccagcggtacggcgacgagtacctgagcgacggggtgcgccag
tacagctcctcggacagcgcccaggaggcgcacgaggccatccggccggccgggtcggag
atgaaaaccaaggacgagctcggcctcagtggcatcgaggcggcgctctacgacctgatc
tggaagcggatgctggccacccagacggcggacgcgaaggtccgctacacgaacgtgtat
ttcgacgccgaggtggacggggacgtggcccgcttccgcgcctccggcaagcggctcgac
tttcccggcttcttccgcgtgctggtggaggggagcgaggacccggaggcggccctgcgg
gaccaggagcgccccctcccgccgctcgaggtgggggagaccgcggcgcagtcggccgac
gacgatggattccaggtccggtcggtcgagccgctcgggcacgagacgaagccgccgtcc
cgctacacggaggcctccctcgtcgagaccctcgaggaggagggcatcggccgcccctcc
acgtacgcctccatcatcggcaccattcaacagcgcggctacgtgcggaagaagggcagc
gcgctcgtgcccaccttcacggccttcgccacgaataacctgatggagacccagtttgag
ccgctggtggacgtccactttacggcggagatggaggacgtgctcgacgacatcgcccgg
gggcggaaggacccgacgccgtacctgcgagacttctacaaaggagaggagggcgtcgag
acgcgcgtggagcaggggctcgacgacatcgaccccaagcagatcagcgagatgtcgttt
cccgaccagtggggcgagtacgtggtgcgcgtgggcaagtacggcgcctacgtcgagggc
gaaatggacggggccaccgtcacggcctcgatccccgacgacctggcgcccggcgacacc
acggaggagcgcctgcgcgagattctggaggaggccaaccggggcgaccgcgtgctcggc
atccacccggaggccagcctcccggtgctgctcaagtccggcccctacggcccgtacgtc
cagctcggcgacgacgaagaggaggacgacccgaagcgcgtctcgcttccgccggacgtg
gagcccgaggacgttgatttcgaccttggcgtccggatcgtcgacctgccccgcaccctc
ggcgagcacccggacaccgggaaggagattgaagccgacatcggccgctacgggccgtac
gtgcgacacgagggcaccttcgcgtcgctgcagaagggcgacgatgtgctggaggtgggg
ctggagcgcgccctagagctgattcggcgcaaagaggcacgcaacgagccggatcgggtc
ctcggcccgcaccccggatcggacgagccggtggaggtatggaatggccgctacgggccg
tacgtgaagcacgacggcaccaacgcgtccctcaaagacgaccagtcgatcgacgacgtg
acgatggacgacgccctcgacctgctggcggagaagggggacgaggccacccagaaggtg
cgggagtag

All links

Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (13)   

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